GenomicsCoreLeuven / GBSXLinks
GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments
☆18Updated 9 years ago
Alternatives and similar repositories for GBSX
Users that are interested in GBSX are comparing it to the libraries listed below
Sorting:
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- A program to call variants from genome alignment☆81Updated 6 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated 10 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆75Updated 4 years ago
- ☆45Updated 8 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last week
- Tutorial about R package PopGenome☆44Updated 6 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Synteny Imager☆65Updated 2 weeks ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Updated 5 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆92Updated last year
- A (very) simple script to QC Hi-C data.☆26Updated 11 months ago
- Estimate recombination rates from population genetic data☆68Updated 5 years ago
- Repository for speciation genomics website☆26Updated 2 months ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Genome Scripts used in fungal comparative genomics☆66Updated 5 years ago
- NLR-Annotator upload☆73Updated 2 years ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- ☆93Updated 4 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year