Alternatives and similar repositories for GBSX

Users that are interested in GBSX are comparing it to the libraries listed below

• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆88Updated 4 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆28Updated 7 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated 2 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆77Updated 4 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆88Updated last year
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆95Updated 9 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆84Updated 4 years ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆48Updated last week
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 3 years ago
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆43Updated 3 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 4 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 9 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆44Updated 6 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆63Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆26Updated 4 years ago
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆71Updated 5 years ago
• niccw / repeatcraftp
  meta-pipeline for repetitive element de-fragmentation and annotation
  ☆28Updated 5 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆32Updated 3 months ago
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆94Updated 2 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆27Updated 5 months ago
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆26Updated last year
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆37Updated 2 years ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆140Updated last month
• nt246 / lcwgs-guide-tutorial
  ☆103Updated 4 years ago