GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments
☆18Aug 19, 2016Updated 9 years ago
Alternatives and similar repositories for GBSX
Users that are interested in GBSX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GBS SNP Calling Reference Optional Pipeline☆33Mar 9, 2022Updated 4 years ago
- a bash pipeline for RAD sequencing☆55Jan 27, 2025Updated last year
- A box of genomics tools☆22Jun 10, 2026Updated 2 months ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- Hapmap-v1☆12Feb 3, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The EpiDiverse Bisulfite SNP-Calling and Methylation Clustering Pipeline, implemented with Nextflow☆12Jul 23, 2022Updated 4 years ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 11 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 12 years ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 4 years ago
- ☆11Mar 13, 2012Updated 14 years ago
- de Bruijn Workflow using Integral information of Short pair End reads☆14Aug 21, 2024Updated last year
- Haplotype-aware assembly of complex regions and small genomes☆15Aug 2, 2026Updated last week
- ☆10Jul 29, 2020Updated 6 years ago
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- BioPerl scripts and utilities☆11Sep 2, 2025Updated 11 months ago
- Simulate short-reads datasets using probabilistic models☆11Jun 1, 2013Updated 13 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 4 years ago
- Gene Environment Interaction Estimator☆13Dec 11, 2025Updated 7 months ago
- NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities …☆59Updated this week
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Mixed Model Package For Genome-wide association mapping.☆17Mar 31, 2019Updated 7 years ago
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 14 years ago
- An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations☆17Mar 27, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Perform GWAS using the FarmCPU model.☆26Dec 14, 2024Updated last year
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Jul 24, 2019Updated 7 years ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 7 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 7 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆23Dec 6, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆33Sep 25, 2019Updated 6 years ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- Syntax highlighting for computational biology☆16Dec 19, 2017Updated 8 years ago
- ☆14Mar 18, 2025Updated last year
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆13Jul 19, 2023Updated 3 years ago
- ☆16Jun 30, 2022Updated 4 years ago