GeneMark-EP and -EP+: automatic eukaryotic gene prediction supported by spliced aligned proteins
☆13Nov 28, 2022Updated 3 years ago
Alternatives and similar repositories for GeneMark-EP-plus
Users that are interested in GeneMark-EP-plus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Get per-nucleotide readcounts from samtools mpileup☆11Apr 17, 2018Updated 8 years ago
- 生信常用分析☆15Aug 2, 2020Updated 6 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Population genomics from metagenomes☆13Sep 1, 2024Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 7 years ago
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23May 26, 2026Updated 4 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- Transposable Element Repeat Result classifIER☆14Oct 2, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆63Oct 27, 2023Updated 2 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- OpenGL Powered Pretext Contact Map Viewer☆63Updated this week
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆17Feb 22, 2026Updated 8 months ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆18Oct 6, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆35Jul 13, 2026Updated 3 months ago
- a broadly applicable tool for automated gene identification and retrieval☆42Jun 16, 2026Updated 4 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆470Jun 17, 2026Updated 4 months ago
- ☆16Oct 8, 2026Updated 2 weeks ago
- assembly evaluation tool☆36May 11, 2022Updated 4 years ago
- a Semi-automated pipeline for assembling T2T genome☆30Oct 16, 2025Updated last year
- my commonly used perl script☆20Aug 28, 2020Updated 6 years ago
- A box of genomics tools☆24Jun 10, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FamDB file format library and utilities☆51Oct 2, 2026Updated 3 weeks ago
- SRF: Satellite Repeat Finder☆110Jan 8, 2024Updated 2 years ago
- ☆18Aug 14, 2024Updated 2 years ago
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 8 years ago
- Automatic evaluation of HGTs☆32Jan 31, 2025Updated last year
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆21May 22, 2020Updated 6 years ago
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 4 months ago