Horizontal Gene Transfer Detection by Mapping Sequencing Reads
☆21Aug 31, 2017Updated 8 years ago
Alternatives and similar repositories for daisy
Users that are interested in daisy are comparing it to the libraries listed below
Sorting:
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 7 years ago
- DarkHorse2 source code☆10May 3, 2022Updated 3 years ago
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆10Apr 29, 2022Updated 3 years ago
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- A box of genomics tools☆22Aug 26, 2020Updated 5 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆143Sep 21, 2023Updated 2 years ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 3 years ago
- k-mer similarity analysis pipeline☆21Nov 20, 2025Updated 3 months ago
- Simple convertor from bam to FASTQ☆26Jun 30, 2015Updated 10 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- ☆10Feb 28, 2018Updated 8 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Analysis of Composition of Microbiomes☆11Jun 17, 2016Updated 9 years ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 10 years ago
- Taxonomy-aware DNA sequence processing toolkit☆33Feb 23, 2026Updated last week
- phylogenetic networks using ggplot2 and ggtree☆13Dec 24, 2024Updated last year
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT☆14Aug 26, 2025Updated 6 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- Automatic evaluation of HGTs☆30Jan 31, 2025Updated last year
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆15Nov 23, 2025Updated 3 months ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Analyze and simulate Pool-Seq time series data☆17Jun 16, 2022Updated 3 years ago
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022☆17Oct 20, 2022Updated 3 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Mar 31, 2022Updated 3 years ago
- Handling, Visualisation and Analysis of Epidemiological Contacts☆16Apr 17, 2025Updated 10 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 2 years ago
- Advanced metagenomic Sequence Analysis in R☆15Aug 17, 2018Updated 7 years ago