ktrappe / daisyLinks
Horizontal Gene Transfer Detection by Mapping Sequencing Reads
☆21Updated 8 years ago
Alternatives and similar repositories for daisy
Users that are interested in daisy are comparing it to the libraries listed below
Sorting:
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 weeks ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- DarkHorse2 source code☆10Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 8 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10Updated 7 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Updated 6 years ago
- A set of scripts for calculating pairwise SNP distance☆44Updated 3 years ago
- GATB Minia assembly pipeline☆31Updated 3 years ago
- Metagenomic binning suite☆29Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Pangenome analysis of eukaryotes.☆21Updated 5 years ago
- ☆35Updated 5 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 10 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 6 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆62Updated 2 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago