predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
☆28Sep 13, 2023Updated 2 years ago
Alternatives and similar repositories for neoepiscope
Users that are interested in neoepiscope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 4 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆63Updated this week
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- ☆22Feb 5, 2025Updated last year
- ☆23Updated this week
- ☆14Nov 3, 2021Updated 4 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- ☆48Jul 7, 2022Updated 3 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- Reproducible Workflows, curated at the Fred Hutch☆12Jan 21, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated this week
- ☆11Sep 7, 2023Updated 2 years ago
- Scalable genomic analysis pipelines, written in WDL☆12Mar 11, 2026Updated last month
- ☆19Feb 20, 2018Updated 8 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆159Aug 20, 2024Updated last year
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆65Apr 9, 2026Updated last week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆29May 19, 2017Updated 8 years ago
- ActiveDriverDB☆12May 1, 2023Updated 2 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆26May 10, 2025Updated 11 months ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆12Jan 31, 2021Updated 5 years ago
- Fast & accurate alignment of barcoded short-reads☆32Jun 29, 2023Updated 2 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 6 years ago
- a pipeline for quantification of circular RNA.☆14May 7, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14Oct 9, 2025Updated 6 months ago
- ☆10Sep 20, 2022Updated 3 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15May 8, 2015Updated 10 years ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- Platform for Oncogenomic Reporting and Interpretation (PORI)☆35Jan 10, 2026Updated 3 months ago
- An amino acid sequence annotator☆17May 15, 2025Updated 11 months ago