10XGenomics / lariatLinks
Linked-Read Alignment Tool
☆27Updated 6 years ago
Alternatives and similar repositories for lariat
Users that are interested in lariat are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- UCSC Nanopore☆43Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- ☆80Updated 4 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆48Updated last year
- ☆20Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Structural Variant Index☆75Updated 7 months ago
- Structural variant caller☆54Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- ☆34Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- ☆21Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Variant annotation and merging pipeline☆36Updated last month