10XGenomics / lariatLinks
Linked-Read Alignment Tool
☆26Updated 6 years ago
Alternatives and similar repositories for lariat
Users that are interested in lariat are comparing it to the libraries listed below
Sorting:
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural Variant Index☆75Updated 9 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- UCSC Nanopore☆43Updated 6 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- ☆81Updated 7 months ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated last month
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- ☆48Updated last year
- Structural variant caller☆55Updated 3 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- ☆20Updated 7 months ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- ☆51Updated 6 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A tutorial for learning de novo assembly☆33Updated 13 years ago