biosails / pheniqs
Fast and accurate sequence demultiplexing
☆27Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for pheniqs
- Merge transcriptome assemblies☆30Updated 8 years ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- ☆23Updated 5 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Find Unique genomic Regions☆29Updated this week
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Evolutionary Transcriptomics with R☆41Updated this week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 3 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 4 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆11Updated 8 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- full taxonomer cython repository☆22Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year