WGLab / LinkedSVLinks
☆20Updated 10 months ago
Alternatives and similar repositories for LinkedSV
Users that are interested in LinkedSV are comparing it to the libraries listed below
Sorting:
- ☆83Updated 9 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant caller☆55Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- ☆36Updated last year
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- ☆35Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- SV genotyping with long reads☆40Updated 2 years ago
- A variant caller for the GBA gene using WGS data☆23Updated last year
- Linked-Read Alignment Tool☆26Updated 6 years ago
- ☆51Updated 6 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- A new tool to infer sex from massively parallel sequencing data.☆17Updated 7 months ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Updated 6 years ago
- ☆50Updated last year
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Structural Variant Index☆75Updated last year
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆31Updated 4 years ago
- Structural variant merging tool☆57Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Detect novel (and reference) STR expansions from short-read data☆70Updated 3 weeks ago