☆20Feb 18, 2025Updated last year
Alternatives and similar repositories for LinkedSV
Users that are interested in LinkedSV are comparing it to the libraries listed below
Sorting:
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 3 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- 10x Genomics Reads Simulator☆46Dec 26, 2023Updated 2 years ago
- Linked-Read Alignment Tool☆26May 16, 2019Updated 6 years ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- ☆12Dec 6, 2023Updated 2 years ago
- HgvsGo is a program designed for analyzing "c." and "p." HGVS (Human Genome Variation Society) notations for single nucleotide variations…☆17Nov 20, 2024Updated last year
- TreeBeST: Tree Building guided by Species Tree☆15Feb 17, 2011Updated 15 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Aug 30, 2022Updated 3 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- Five implementations of double linked lists to demonstrate generic data structures in C☆17Dec 19, 2019Updated 6 years ago
- ☆16Mar 17, 2023Updated 2 years ago
- Fast & accurate alignment of barcoded short-reads☆32Jun 29, 2023Updated 2 years ago
- A mosaic detecting software based on phasing and random forest☆70Dec 8, 2025Updated 2 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- ☆16Nov 25, 2019Updated 6 years ago
- Various bioinformatics tools☆20Oct 29, 2024Updated last year
- Alignment-free detection of structural variations and viral integrations in circulating tumor DNA☆17Nov 11, 2021Updated 4 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Dec 6, 2018Updated 7 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- simple program to rotate a circular sequence to start at a given position or string☆19Jul 9, 2023Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Jan 6, 2026Updated last month
- 1-code framework: docs, C-library, and tools☆25Jan 11, 2026Updated last month
- Tools for analyzing 10X Genomics data☆42Feb 6, 2019Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆18Apr 20, 2023Updated 2 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer☆20Jan 21, 2019Updated 7 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Feb 22, 2023Updated 3 years ago
- Sentieon DNAseq☆23Dec 30, 2020Updated 5 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆70Feb 21, 2026Updated last week
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 2 years ago