Alternatives and similar repositories for LinkedSV:

Users that are interested in LinkedSV are comparing it to the libraries listed below

• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆47Updated 5 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• MeHelmy / princess
  ☆79Updated 9 months ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆31Updated last month
• Nextomics / nextsv
  ☆33Updated 10 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆56Updated last week
• mcfrith / tandem-genotypes
  ☆48Updated 7 months ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• dellytools / svprops
  Computes various SV statistics
  ☆14Updated last year
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 5 months ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆48Updated 4 years ago
• farhangus / Sniffles2_plot
  ☆28Updated 6 months ago
• EichlerLab / pacbio_variant_caller
  SMRT-SV: Structural variant and indel caller for PacBio reads
  ☆28Updated 6 years ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆33Updated 6 years ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆22Updated 2 years ago
• stat-lab / MOPline
  Detection and genotyping of structural variants
  ☆18Updated 2 weeks ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 3 years ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 4 months ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 2 years ago
• 10XGenomics / lariat
  Linked-Read Alignment Tool
  ☆27Updated 5 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆35Updated 7 months ago
• BGI-Qingdao / stlfr2supernova_pipeline
  A pipeline to de novo assemble the stLFR reads using Supernova Assembler
  ☆20Updated last year