WGLab / LinkedSVLinks
☆20Updated 8 months ago
Alternatives and similar repositories for LinkedSV
Users that are interested in LinkedSV are comparing it to the libraries listed below
Sorting:
- ☆81Updated 7 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- Linked-Read Alignment Tool☆26Updated 6 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- ☆36Updated last year
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- ☆51Updated 6 years ago
- ☆49Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆44Updated 3 months ago
- UCSC Nanopore☆44Updated 6 years ago
- Structural Variant Index☆75Updated 10 months ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- Structural variant merging tool☆55Updated last year
- ☆30Updated 4 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆44Updated last year
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago