hartwigmedical / scriptsLinks
☆21Updated last week
Alternatives and similar repositories for scripts
Users that are interested in scripts are comparing it to the libraries listed below
Sorting:
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆21Updated 2 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 8 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- Toolkit for single-cell copy number analysis☆24Updated 3 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆34Updated 6 months ago
- Easy Copy Number !☆21Updated 2 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 2 months ago
- ☆12Updated 6 years ago
- ☆17Updated 6 years ago
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆39Updated 5 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 5 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- ☆41Updated 7 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- ☆16Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 11 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 3 years ago