hartwigmedical / scriptsLinks
☆21Updated this week
Alternatives and similar repositories for scripts
Users that are interested in scripts are comparing it to the libraries listed below
Sorting:
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated 4 months ago
- Toolkit for single-cell copy number analysis☆23Updated this week
- Easy Copy Number !☆21Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 5 months ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆11Updated 4 years ago
- ☆11Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆10Updated 5 years ago
- ☆17Updated 6 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 4 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 3 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 6 months ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 3 months ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- ☆17Updated 2 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 2 months ago
- ☆44Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 7 months ago
- ☆19Updated 7 years ago