☆21Apr 10, 2026Updated this week
Alternatives and similar repositories for scripts
Users that are interested in scripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Apr 2, 2026Updated last week
- An R package for predicting HR deficiency from mutation contexts☆30Feb 13, 2025Updated last year
- Various algorithms for analysing genomics data☆272Updated this week
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆106Apr 2, 2026Updated last week
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- ☆48Jan 7, 2025Updated last year
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated last year
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 4 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆14Dec 27, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 4 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 3 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- ☆13Jun 6, 2024Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- ☆14Mar 28, 2025Updated last year
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- Merging, Annotation, Validation, and Illustration of Structural variants☆76Aug 22, 2023Updated 2 years ago
- Generic SDK and CLI for GA4GH API services☆15Feb 2, 2026Updated 2 months ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- ☆13Mar 29, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆50Nov 20, 2023Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- ☆14Jun 3, 2022Updated 3 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Nov 13, 2024Updated last year
- ☆10May 31, 2022Updated 3 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Mar 28, 2026Updated 2 weeks ago