aristoteleo / spateo-viewerLinks
Web application demonstrating 3D modeling of spatial transcriptomics
☆22Updated last year
Alternatives and similar repositories for spateo-viewer
Users that are interested in spateo-viewer are comparing it to the libraries listed below
Sorting:
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆62Updated 3 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆70Updated 3 weeks ago
- spatial transcriptome, single cell☆72Updated 2 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆91Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆47Updated 4 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆79Updated 7 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 9 months ago
- ☆16Updated last year
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- ☆41Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆97Updated 9 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Updated last year
- trajectory inference☆105Updated 10 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 3 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆99Updated 3 years ago
- End-to-end analysis of spatial multi-omics data☆98Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆145Updated this week
- Spatially resolved transcriptomic analysis☆62Updated 3 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆68Updated last week
- ☆36Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 9 months ago
- CAST package☆41Updated last year
- ☆53Updated 4 years ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Updated 2 months ago
- ☆131Updated 2 years ago
- ☆45Updated 4 months ago
- ☆56Updated last year
- ☆25Updated 8 months ago
- A set of files to do genomics analysis on python☆18Updated 6 months ago
- ☆50Updated 2 months ago