aristoteleo / spateo-viewerLinks
Web application demonstrating 3D modeling of spatial transcriptomics
☆21Updated 7 months ago
Alternatives and similar repositories for spateo-viewer
Users that are interested in spateo-viewer are comparing it to the libraries listed below
Sorting:
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆82Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆37Updated 5 months ago
- ☆36Updated 2 months ago
- CAST package☆40Updated 9 months ago
- ☆20Updated 4 months ago
- ☆49Updated 2 months ago
- ☆58Updated this week
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆44Updated 3 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 8 months ago
- Nonnegative spatial factorization for multivariate count data☆58Updated 2 years ago
- Spatial analysis of FISH data☆31Updated 2 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆58Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆88Updated 5 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆76Updated 3 months ago
- ☆16Updated last year
- ☆19Updated 3 months ago
- ☆52Updated 4 years ago
- A set of files to do genomics analysis on python☆18Updated last month
- Spatially resolved transcriptomic analysis☆56Updated 2 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆52Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated last month
- Spatial mapping of cell types by integration of transcriptomics data☆93Updated 3 years ago
- End-to-end analysis of spatial multi-omics data☆87Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 5 months ago
- Test genes for Spatial Variation☆14Updated 7 months ago
- ☆45Updated last week
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆64Updated 9 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated 2 weeks ago
- ☆46Updated last year