aristoteleo / spateo-viewerView external linksLinks
Web application demonstrating 3D modeling of spatial transcriptomics
☆22Dec 9, 2024Updated last year
Alternatives and similar repositories for spateo-viewer
Users that are interested in spateo-viewer are comparing it to the libraries listed below
Sorting:
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 6 months ago
- Spatiotemporal modeling of spatial transcriptomics☆328Updated this week
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- federated learning with tabular learning☆26Mar 4, 2025Updated 11 months ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 5 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- Tutorials for Squidpy☆35Dec 18, 2025Updated last month
- Spatial-Linked Alignment Tool☆90Dec 20, 2024Updated last year
- ☆131Nov 17, 2023Updated 2 years ago
- ☆21Feb 3, 2026Updated last week
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆84Updated this week
- ☆41Updated this week
- A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions…☆48Apr 4, 2021Updated 4 years ago
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆27Updated this week
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- A set of files to do genomics analysis on python☆18Jun 5, 2025Updated 8 months ago
- inferring regulatory cellular dynamics☆63Jan 13, 2026Updated last month
- ☆22Apr 27, 2023Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆49Apr 28, 2023Updated 2 years ago
- Python client for the OmniPath web service☆59Jun 26, 2025Updated 7 months ago
- A toolkit of spatial transcriptomic analysis.☆273Updated this week
- ☆22Aug 25, 2022Updated 3 years ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆29Oct 24, 2024Updated last year
- A plugin to visualise 3D spatial single cell omics☆20Oct 22, 2025Updated 3 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆490Feb 7, 2026Updated last week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆150Dec 5, 2024Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆100Feb 26, 2025Updated 11 months ago
- Guides and code for 3D nuclear instance segmentation☆22Dec 2, 2025Updated 2 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Nov 6, 2025Updated 3 months ago
- comseg☆24Feb 6, 2025Updated last year
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆26Updated this week
- ☆61Jul 23, 2024Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆202Dec 10, 2024Updated last year
- The Monod package fits CME models to sequencing data.☆33Jan 28, 2026Updated 2 weeks ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Apr 11, 2025Updated 10 months ago
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 10 months ago