ketatam / DiffDock-PPLinks
Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
☆225Updated last year
Alternatives and similar repositories for DiffDock-PP
Users that are interested in DiffDock-PP are comparing it to the libraries listed below
Sorting:
- Diffusion-based all-atom protein generative model.☆227Updated 3 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆142Updated last year
- Protein-ligand structure prediction☆235Updated 4 months ago
- Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)☆178Updated 2 weeks ago
- ☆206Updated last year
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆158Updated this week
- Protein Ligand INteraction Dataset and Evaluation Resource☆263Updated 5 months ago
- ☆230Updated 2 years ago
- ☆225Updated last year
- ☆107Updated 2 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆145Updated 7 months ago
- Dataset and package for working with protein-protein interactions in 3D☆96Updated 7 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆211Updated 4 months ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆273Updated last year
- ☆95Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆109Updated last year
- ☆135Updated 5 months ago
- ☆128Updated 6 months ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆314Updated 2 months ago
- Official repository of EnzymeFlow☆97Updated last year
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆111Updated 2 years ago
- ☆225Updated 3 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆183Updated last year
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆150Updated 2 years ago
- Diffusion model based protein-ligand flexible docking method☆115Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆258Updated 7 months ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆252Updated 2 years ago
- Generative Language Modeling for Antibody Design☆173Updated last year
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆204Updated 7 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆121Updated 9 months ago