ketatam / DiffDock-PPLinks
Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
☆223Updated last year
Alternatives and similar repositories for DiffDock-PP
Users that are interested in DiffDock-PP are comparing it to the libraries listed below
Sorting:
- Diffusion-based all-atom protein generative model.☆225Updated 2 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆140Updated last year
- Protein-ligand structure prediction☆234Updated 3 months ago
- ☆204Updated last year
- Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)☆175Updated last week
- ☆228Updated 2 years ago
- Protein Ligand INteraction Dataset and Evaluation Resource☆257Updated 5 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆204Updated 3 months ago
- ☆133Updated 4 months ago
- Masif seed paper repository☆164Updated last month
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆144Updated 7 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆183Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆108Updated last year
- ☆222Updated last year
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆148Updated 2 years ago
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆202Updated 7 months ago
- Dataset and package for working with protein-protein interactions in 3D☆96Updated 6 months ago
- ☆126Updated 5 months ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆270Updated last year
- Official repository of EnzymeFlow☆95Updated 11 months ago
- ☆107Updated 2 years ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆155Updated last week
- ☆95Updated last year
- An awesome & curated list of docking papers☆118Updated 8 months ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆110Updated 2 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆121Updated 8 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆257Updated 6 months ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆311Updated last month
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆214Updated 3 months ago
- Generative Language Modeling for Antibody Design☆172Updated last year