Alternatives and similar repositories for ProteinMPNN

Users that are interested in ProteinMPNN are comparing it to the libraries listed below

• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆848Updated last month
• Peldom / papers_for_protein_design_using_DL
  List of papers about Proteins Design using Deep Learning
  ☆1,837Updated last week
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆929Updated 3 months ago
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆784Updated 5 months ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆770Updated 6 months ago
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆1,110Updated 2 weeks ago
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,379Updated 7 months ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆633Updated last year
• sokrypton / ColabFold
  Making Protein folding accessible to all!
  ☆2,533Updated this week
• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,276Updated 6 months ago
• RosettaCommons / RFdiffusion
  Code for running RFdiffusion
  ☆2,600Updated 2 weeks ago
• yangkky / Machine-learning-for-proteins
  Listing of papers about machine learning for proteins.
  ☆1,681Updated last year
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆453Updated last year
• bytedance / Protenix
  A trainable PyTorch reproduction of AlphaFold 3.
  ☆1,396Updated this week
• Graylab / DL4Proteins-notebooks
  Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
  ☆527Updated 2 months ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆389Updated 2 years ago
• ccsb-scripps / AutoDock-Vina
  AutoDock Vina
  ☆863Updated 2 months ago
• nrbennet / dl_binder_design
  ☆370Updated last year
• dauparas / LigandMPNN
  ☆491Updated 10 months ago
• salesforce / progen
  Official release of the ProGen models
  ☆683Updated 2 years ago
• generatebio / chroma
  A generative model for programmable protein design
  ☆783Updated last year
• westlake-repl / SaProt
  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
  ☆547Updated 2 weeks ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆705Updated last year
• gnina / gnina
  A deep learning framework for molecular docking
  ☆807Updated last month
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆560Updated last year
• kyegomez / Open-AF3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆801Updated this week
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆369Updated last year
• nadavbra / protein_bert
  ☆563Updated 8 months ago
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆601Updated 2 years ago
• microsoft / evodiff
  Generation of protein sequences and evolutionary alignments via discrete diffusion models
  ☆657Updated 6 months ago