Alternatives and similar repositories for RFDesign

Users that are interested in RFDesign are comparing it to the libraries listed below

• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆339Updated last week
• RosettaCommons / RFantibody
  ☆327Updated 2 weeks ago
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆310Updated last month
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆323Updated last year
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆386Updated 2 years ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆300Updated 3 months ago
• rdk / p2rank
  P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
  ☆356Updated last month
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆207Updated 6 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆164Updated last year
• nrbennet / dl_binder_design
  ☆366Updated last year
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆349Updated 2 years ago
• RosettaCommons / RFdiffusion2
  Inference code for RFdiffusion2
  ☆326Updated this week
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆209Updated 9 months ago
• uw-ipd / RoseTTAFold2
  ☆200Updated 6 months ago
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆225Updated 2 months ago
• gjoni / trDesign
  trRosetta for protein design
  ☆183Updated 4 years ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆245Updated 3 weeks ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆204Updated 3 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆164Updated 9 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆164Updated last year
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆233Updated 3 months ago
• guyujun / pyrosetta-basic
  ☆174Updated 4 years ago
• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆270Updated last year
• ChatMol / ChatMol
  ChatMol
  ☆237Updated 8 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆191Updated last week
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆217Updated 2 years ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆164Updated last month
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆450Updated last year
• FreyrS / dMaSIF
  ☆228Updated 2 years ago