Alternatives and similar repositories for RFDesign

Users that are interested in RFDesign are comparing it to the libraries listed below

• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆356Updated 2 months ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆326Updated last year
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆320Updated 3 months ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆403Updated 2 years ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆301Updated 5 months ago
• RosettaCommons / RFantibody
  ☆432Updated last week
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆225Updated 8 months ago
• gjoni / trDesign
  trRosetta for protein design
  ☆183Updated 4 years ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆260Updated last month
• RosettaCommons / RFdiffusion2
  Inference code for RFdiffusion2
  ☆390Updated 2 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆166Updated last year
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆224Updated 5 months ago
• nrbennet / dl_binder_design
  ☆386Updated last year
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆352Updated 2 years ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆170Updated 2 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆237Updated 6 months ago
• rdk / p2rank
  P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
  ☆383Updated last month
• uw-ipd / RoseTTAFold2
  ☆207Updated 9 months ago
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆222Updated 3 months ago
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆229Updated 5 months ago
• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆282Updated last month
• ChatMol / ChatMol
  ChatMol
  ☆243Updated 2 months ago
• ikalvet / heme_binder_diffusion
  ☆146Updated 6 months ago
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆225Updated 11 months ago
• guyujun / pyrosetta-basic
  ☆181Updated 4 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆220Updated 2 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆133Updated 4 years ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆462Updated last year
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆170Updated 2 years ago
• dauparas / LigandMPNN
  ☆533Updated 11 months ago