lucidrains / ddpm-ipa-protein-generationLinks
Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models"
☆89Updated 3 years ago
Alternatives and similar repositories for ddpm-ipa-protein-generation
Users that are interested in ddpm-ipa-protein-generation are comparing it to the libraries listed below
Sorting:
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Updated 2 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Updated 4 years ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆89Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆177Updated 2 years ago
- Code for 'On Pre-trained Language Models For Antibody'☆32Updated 2 years ago
- Database of Interacting Protein Structures (DIPS)☆102Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated last month
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆48Updated 3 years ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆69Updated last year
- Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]☆109Updated 2 years ago
- Protein Design with Guided Discrete Diffusion☆134Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated 2 years ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆27Updated last year
- Official implementation of "Learning the language of protein structures"☆39Updated 3 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 4 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆77Updated 3 months ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆112Updated 4 years ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆74Updated 2 years ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆37Updated 2 years ago
- ☆46Updated 2 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆96Updated 2 years ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆95Updated 2 years ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆56Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year