Diffusion models of protein structure; trigonometry and attention are all you need!
☆566Dec 12, 2023Updated 2 years ago
Alternatives and similar repositories for foldingdiff
Users that are interested in foldingdiff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation for SE(3) diffusion model with application to protein backbone generation☆418Jul 3, 2023Updated 2 years ago
- Making Protein Design accessible to all via Google Colab!☆901Updated this week
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆357Jun 29, 2023Updated 2 years ago
- A generative model for programmable protein design☆809Apr 11, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Code for the ProteinMPNN paper☆1,685Aug 14, 2024Updated last year
- Code for running RFdiffusion☆2,810Nov 20, 2025Updated 4 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- OmegaFold Release Code☆616Dec 12, 2022Updated 3 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated last year
- ☆118Dec 7, 2022Updated 3 years ago
- List of papers about Proteins Design using Deep Learning☆1,914Updated this week
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆520Mar 22, 2026Updated 2 weeks ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- A collection of *fold* tools☆304Aug 8, 2025Updated 8 months ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,471May 2, 2025Updated 11 months ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆666Jan 15, 2026Updated 2 months ago
- Fast protein backbone generation with SE(3) flow matching.☆322Jul 19, 2024Updated last year
- ☆214Sep 24, 2024Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,025Feb 7, 2024Updated 2 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 3 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆268Apr 27, 2025Updated 11 months ago
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,324Dec 16, 2025Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 7 months ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆410Sep 3, 2023Updated 2 years ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆281Dec 10, 2024Updated last year
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆233Dec 29, 2023Updated 2 years ago
- Official release of the ProGen models☆697Aug 4, 2023Updated 2 years ago
- ☆211Apr 21, 2025Updated 11 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,210Mar 10, 2026Updated 3 weeks ago
- Compressing protein structures effectively with torsion angles☆193Feb 10, 2026Updated last month
- ☆562Feb 6, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,749Mar 30, 2026Updated last week
- Protein hallucination and inpainting with RoseTTAFold☆281Mar 30, 2023Updated 3 years ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆378Feb 26, 2026Updated last month
- Listing of papers about machine learning for proteins.☆1,697May 31, 2024Updated last year
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Dec 27, 2022Updated 3 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆238Mar 26, 2026Updated 2 weeks ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆581Mar 8, 2026Updated last month