aprilweilab / grglLinks
Genotype Representation Graph Library
☆40Updated this week
Alternatives and similar repositories for grgl
Users that are interested in grgl are comparing it to the libraries listed below
Sorting:
- Tools for merging Tandem Repeat VCF files☆37Updated 9 months ago
- ☆31Updated 7 months ago
- ☆23Updated 3 weeks ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- Easy genomic regions for short-read variant calling☆45Updated 5 months ago
- Interface to various variant calling formats.☆31Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Updated 3 months ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Updated 3 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Updated 3 months ago
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆18Updated 2 months ago
- ☆20Updated 2 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 8 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆35Updated 3 months ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- ☆13Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 11 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆24Updated this week
- Ultra-efficient mapping-free structural variation genotyper☆20Updated 4 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Updated 2 years ago
- ☆14Updated 2 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- Population-wide Deletion Calling☆35Updated 9 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- ☆23Updated 8 months ago
- a lexicographically-based GTF/GFF sorter☆38Updated 9 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year