aprilweilab / grglLinks
Genotype Representation Graph Library
☆40Updated this week
Alternatives and similar repositories for grgl
Users that are interested in grgl are comparing it to the libraries listed below
Sorting:
- ☆31Updated 7 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- Easy genomic regions for short-read variant calling☆45Updated 5 months ago
- a lexicographically-based GTF/GFF sorter☆38Updated 9 months ago
- Tools for merging Tandem Repeat VCF files☆37Updated 9 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Scoring GT/AG sites for improving spliced alignment☆50Updated 3 months ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆18Updated 5 months ago
- Rust wrapper for the next generation (still currently in C++)☆30Updated last week
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- ☆23Updated 3 weeks ago
- ☆22Updated 3 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Updated 3 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆19Updated last month
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆38Updated 2 months ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Updated 3 months ago
- Fast sequencing data quality metrics☆31Updated 5 months ago
- A library and tool for accessing remote BLOW5 files.☆24Updated last week
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆24Updated 6 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Updated 4 months ago
- A graph aligner☆30Updated last year
- ☆23Updated 8 months ago
- gia: Genomic Interval Arithmetic☆66Updated last year
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆18Updated 2 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- Interface to various variant calling formats.☆31Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 8 months ago