Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly
☆16Jun 11, 2024Updated last year
Alternatives and similar repositories for ELBA
Users that are interested in ELBA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- High Performance Sorting Based Distributed memory K-mer counter☆15Dec 8, 2025Updated 5 months ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆30Sep 23, 2022Updated 3 years ago
- The Combinatorial BLAS (CombBLAS) is an extensible distributed-memory parallel graph library offering a small but powerful set of linear …☆81Mar 10, 2026Updated 2 months ago
- GuidedSampler: Coverage-guided Sampling of SMT Solutions☆15Jul 9, 2025Updated 10 months ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The Berkeley Container Library☆128Dec 12, 2025Updated 5 months ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆53May 16, 2022Updated 4 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- ☆16Jun 12, 2020Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated last month
- ☆49Apr 11, 2025Updated last year
- A genome-wide IM blockwise likelihood estimation toolkit☆18Jun 24, 2024Updated last year
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Apr 29, 2026Updated 2 weeks ago
- Blaze: Fast Graph Processing on Fast SSDs (SC'22)☆11Oct 12, 2022Updated 3 years ago
- ☆10Nov 28, 2023Updated 2 years ago
- A cli tool helping memorizing 3000 core GRE vocabulary words☆11Jan 19, 2024Updated 2 years ago
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 7 months ago
- Official code of our work, VCSR: Mutable CSR Graph Format Using Vertex-Centric Packed Memory Array [CCGrid 2022].☆13Jun 30, 2022Updated 3 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Apr 1, 2026Updated last month
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆26Aug 20, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆78Jun 12, 2020Updated 5 years ago
- Ultra fast MSD radix sorter☆10Jun 23, 2020Updated 5 years ago
- A Wordle game written in Rust, refined. Play in browser with the power of WebAssembly! Course project of Programming Training, Tsinghua U…☆16Jul 10, 2024Updated last year
- Source code of the paper "OpSparse: a Highly Optimized Framework for Sparse General Matrix Multiplication on GPUs"☆16Aug 23, 2022Updated 3 years ago
- Terrace: A Hierarchical Graph Container for Skewed Dynamic Graphs☆29Jun 18, 2023Updated 2 years ago
- ☆22Apr 2, 2015Updated 11 years ago
- ☆22Sep 12, 2019Updated 6 years ago
- ☆18Jan 29, 2025Updated last year
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Arrow Matrix Decomposition - Communication-Efficient Distributed Sparse Matrix Multiplication☆15Mar 25, 2024Updated 2 years ago
- Chisel Project for Integrating RTL code into SDAccel☆17Jan 12, 2018Updated 8 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Triton to TVM transpiler.☆23Oct 14, 2024Updated last year
- Cloud native connectivity for Unreal Engine☆10Apr 14, 2023Updated 3 years ago
- A 32-bit 5-stage RISC-V pipeline processor core with traps, S privilege mode, virtual memory, cache, branch prediction and TLB. Powered b…☆15Feb 14, 2024Updated 2 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago