Alternatives and similar repositories for EFO-UKB-mappings

Users that are interested in EFO-UKB-mappings are comparing it to the libraries listed below

• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆58Updated 8 months ago
• mikelkou / fava
  Functional Associations using Variational Autoencoders
  ☆43Updated last month
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆46Updated 5 years ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆96Updated last year
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆130Updated 4 months ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆62Updated 5 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆50Updated 2 years ago
• opentargets / gentropy
  Open Targets python framework for post-GWAS analysis
  ☆51Updated this week
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆27Updated last year
• MaayanLab / appyter-catalog
  A catalog of appyter notebooks
  ☆41Updated last month
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆44Updated 5 months ago
• astrazeneca-cgr-publications / mantis-ml-release
  mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens
  ☆30Updated last year
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆26Updated 5 years ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆54Updated last month
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆34Updated 10 months ago
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆27Updated last year
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆37Updated 3 months ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆39Updated 2 years ago
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆30Updated 2 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆50Updated this week
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated last month
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆57Updated 5 years ago
• hart-lab / drugz
  DRUGZ software
  ☆25Updated 4 years ago
• wgmao / PLIER
  Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
  ☆54Updated last year
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆42Updated last week
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆33Updated 8 years ago
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 5 years ago
• sebriois / biomart
  Python biomart API
  ☆69Updated 2 years ago