Genotyping of paralog specific gene types
☆22Nov 6, 2025Updated 8 months ago
Alternatives and similar repositories for Ctyper
Users that are interested in Ctyper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Targeted genotyper for complex polymorphic genes☆43Jul 7, 2026Updated 2 weeks ago
- tandemtwister: Tandem repeat genotyping tool☆19Feb 1, 2026Updated 5 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- ☆24Feb 26, 2026Updated 4 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genotyping of copy number sensitive allele-specific haplotypes☆29Jun 18, 2026Updated last month
- ☆18Apr 26, 2026Updated 2 months ago
- ☆19Jul 12, 2026Updated last week
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 7 months ago
- Variant Calling for the HPRC2☆16May 26, 2026Updated last month
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆26Feb 23, 2026Updated 4 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- A nextflow pipeline for calling modifications in nanopore reads.☆16Jul 7, 2026Updated 2 weeks ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆31Apr 22, 2026Updated 2 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated 11 months ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆20Mar 2, 2026Updated 4 months ago
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated last month
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 9 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 4 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆43Dec 18, 2025Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated 3 weeks ago
- Fast population genetics clustering.☆32Jul 10, 2026Updated last week
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Jul 1, 2026Updated 2 weeks ago
- Associated code for EvoWeaver publication☆17May 19, 2025Updated last year
- Hybridization detection using phylogenetic invariants☆53Oct 29, 2024Updated last year
- Ploidy agnostic phasing pipeline and algorithm☆50Jan 3, 2024Updated 2 years ago
- ☆49Sep 17, 2024Updated last year
- Rapid and accurate ancestry inference using SNVs.☆29Aug 15, 2025Updated 11 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Aug 3, 2025Updated 11 months ago
- Telomere compliment tools☆26Nov 17, 2025Updated 8 months ago
- ☆15Feb 28, 2025Updated last year
- Misassembly Identifier☆23Jun 2, 2026Updated last month
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Tool for drawing gene structures from genome annotation files.☆22Jun 20, 2026Updated last month
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year