Genotyping of paralog specific gene types
☆22Aug 28, 2026Updated 3 weeks ago
Alternatives and similar repositories for Ctyper
Users that are interested in Ctyper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Targeted genotyper for complex polymorphic genes☆47Updated this week
- tandemtwister: Tandem repeat genotyping tool☆22Feb 1, 2026Updated 7 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- ☆24Feb 26, 2026Updated 6 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆18Apr 26, 2026Updated 4 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated 3 weeks ago
- ☆21Jul 12, 2026Updated 2 months ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 9 months ago
- Variant Calling for the HPRC2☆17May 26, 2026Updated 3 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- A nextflow pipeline for calling modifications in nanopore reads.☆17Updated this week
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆32Apr 22, 2026Updated 4 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated last year
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆27Feb 23, 2026Updated 6 months ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆22Mar 2, 2026Updated 6 months ago
- COsine SImilarity-based Genotyper using pangenomes☆39Sep 8, 2026Updated last week
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated 3 months ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Tandem repeat genotyping with long reads☆40Sep 23, 2025Updated 11 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Copy number estimation and variant calling for duplicated genes using WGS.☆40Apr 29, 2026Updated 4 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 9 months ago
- This is the standalone version of the EviAnn pipeline☆186Sep 10, 2026Updated last week
- Fast population genetics clustering.☆36Sep 1, 2026Updated 2 weeks ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 1, 2026Updated 2 weeks ago
- Associated code for EvoWeaver publication☆17May 19, 2025Updated last year
- Hybridization detection using phylogenetic invariants☆53Oct 29, 2024Updated last year
- Ploidy agnostic phasing pipeline and algorithm☆50Jan 3, 2024Updated 2 years ago
- Rapid and accurate ancestry inference using SNVs.☆30Aug 15, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆49Sep 17, 2024Updated 2 years ago
- Telomere compliment tools☆26Nov 17, 2025Updated 10 months ago
- Misassembly Identifier☆27Sep 5, 2026Updated 2 weeks ago
- ☆16Feb 28, 2025Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Tool for drawing gene structures from genome annotation files.☆22Jun 20, 2026Updated 3 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year