secondary analysis pipelines parallelized with apache spark
☆18Mar 2, 2022Updated 4 years ago
Alternatives and similar repositories for genomics-pipelines
Users that are interested in genomics-pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Mar 24, 2025Updated last year
- Delta Sharing + MLflow for ML model & experiment exchange (arcuate delta - a fan shaped river delta)☆22Jan 29, 2026Updated 5 months ago
- Genome-wide association studies identify genetic variations associated with a target disease or trait. Researchers and clinicians can use…☆11Apr 12, 2024Updated 2 years ago
- ☆20Nov 8, 2024Updated last year
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- DuckDB Extension for working with bioinformatic data.☆19Oct 18, 2023Updated 2 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Apr 28, 2021Updated 5 years ago
- Genotype Representation Graph Library☆49Updated this week
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Aug 24, 2020Updated 5 years ago
- ☆19Sep 10, 2025Updated 10 months ago
- ☆17Jan 6, 2023Updated 3 years ago
- Demo of DuckDB Spark API implements. Same Pyspark code, but DuckDB under the hood☆15Nov 16, 2023Updated 2 years ago
- Tutorial for running the PredictDB pipeline with GEUVADIS data☆18Jan 22, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated last year
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 7 months ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆33May 6, 2026Updated 2 months ago
- Introduction to Data Analysis with Python for UW Foster School of Business☆21Aug 17, 2019Updated 6 years ago
- Best practices for working with Databricks from an IDE☆54Apr 19, 2023Updated 3 years ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆26Jun 7, 2026Updated last month
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 4 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆42Feb 13, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Jan 8, 2020Updated 6 years ago
- Falcon7B + Falcon40B support - in branch falcon40b. Now all good and working. But main action now in https://github.com/cmp-nct/ggllm.cpp☆10Sep 30, 2023Updated 2 years ago
- This is a simple demo for integrating Authing in AWS China region to protect API Gateway REST API and other AWS resources such as IoT, Po…☆12Oct 12, 2024Updated last year
- Python library & CLI to create, view and edit PFB files☆14Updated this week
- ☆11Jun 26, 2026Updated 3 weeks ago
- ☆13May 2, 2018Updated 8 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆23Oct 25, 2023Updated 2 years ago
- Ascertained Sequentially Markovian Coalescent☆19Oct 22, 2025Updated 8 months ago
- REPL for C preprocessor of C++17☆10Jul 20, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆10Updated this week
- Repo for participating in cooperative survival MOOC☆14May 14, 2018Updated 8 years ago
- ☆11Mar 4, 2025Updated last year
- Iterative examples of how to set up Bazel with Tilt☆15Jun 28, 2021Updated 5 years ago
- Simple Jupyter chat UI for LangChain☆10Jul 3, 2024Updated 2 years ago
- The Genomics Tertiary Analysis and Machine Learning Using Amazon SageMaker solution creates a scalable environment in AWS to develop mach…☆11Jul 7, 2023Updated 3 years ago
- This construct builds some elements for you to quickly launch an EMR Serverless application. After submitting the Emr Serverless job, you…☆11Nov 18, 2025Updated 8 months ago