Zilong-Li / vcfppRLinks
The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049
☆15Updated this week
Alternatives and similar repositories for vcfppR
Users that are interested in vcfppR are comparing it to the libraries listed below
Sorting:
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Updated last week
- A smorgasbord of R functions for population genomic analyses☆18Updated last week
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆17Updated last week
- Repository for pipeline code☆25Updated last year
- Tao Yan's Plot Toolkit☆12Updated 5 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- ☆25Updated last year
- Functions to compare a SV call sets against a truth set.☆29Updated last year
- Tools for merging Tandem Repeat VCF files☆29Updated last month
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆12Updated last month
- Teaching modules for Human Genome Variation Lab.☆20Updated 10 months ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆22Updated last week
- ☆30Updated last month
- Unfazed by genomic variant phasing☆26Updated last year
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 weeks ago
- Effective Computing—Resources for Computational Biologists☆26Updated 5 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Scalable population structure inference☆18Updated 2 years ago
- ☆25Updated 3 weeks ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Updated 7 years ago
- Scoring GT/AG sites for improving spliced alignment☆22Updated this week
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 weeks ago
- ☆21Updated 2 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 4 years ago
- https://filippob.github.io/introduction_to_gwas/☆20Updated 11 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆21Updated 3 years ago
- R package to model and simulate admixed populations☆8Updated last year