Alternatives and similar repositories for vcfppR:

Users that are interested in vcfppR are comparing it to the libraries listed below

• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 2 years ago
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated 8 months ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆29Updated 11 months ago
• slzarate / parliament2
  Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
  ☆20Updated 3 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 2 weeks ago
• tkzeng / GeneBayes
  ☆25Updated last year
• genomic-medicine-sweden / tomte
  A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
  ☆13Updated this week
• bhofmei / bhofmei-jbplugins
  All JBrowse plugins created by Brigitte Hofmeister
  ☆10Updated 6 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 4 months ago
• YTLogos / ttplot
  Tao Yan's Plot Toolkit
  ☆11Updated 5 years ago
• birneylab / flexlmm
  Flexible linear mixed model framework for Genome Wide Association Studies
  ☆19Updated last month
• sunnyeesl / BigLD
  ☆21Updated 2 years ago
• chrchang / eigensoft
  Experimental EIGENSOFT performance improvements.
  ☆22Updated 10 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆25Updated last year
• Nealelab / whole_genome_analysis_pipeline
  ☆18Updated last year
• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆14Updated 2 years ago
• MorrellLAB / sequence_handling
  A series of scripts to automate sequence workflows
  ☆19Updated last week
• gjun / muCNV
  ☆20Updated last year
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆24Updated 3 years ago
• knmkr / lift-over-vcf
  UCSC liftOver (genome build converter) for vcf format
  ☆12Updated 7 years ago
• Zilong-Li / vcfpp
  a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
  ☆22Updated last month
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 6 years ago
• ikmb / eagleimp
  ☆25Updated 2 weeks ago
• frazer-lab / i2QTL-SV-STR-analysis
  Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…
  ☆11Updated 5 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated 3 weeks ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• mccoy-lab / t2t-variants
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Updated 2 years ago