ZJUFanLab / scNicheLinks
a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
☆34Updated 2 months ago
Alternatives and similar repositories for scNiche
Users that are interested in scNiche are comparing it to the libraries listed below
Sorting:
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 8 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆25Updated 10 months ago
- ☆59Updated 11 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆50Updated last month
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆36Updated 5 months ago
- ☆45Updated last year
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- ☆48Updated last month
- Implementation of CellNEST method☆36Updated this week
- ☆43Updated last year
- End-to-end analysis of spatial multi-omics data☆81Updated last week
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆71Updated 5 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆51Updated last month
- ☆30Updated 4 months ago
- ☆21Updated 2 years ago
- ☆28Updated 4 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆32Updated 2 years ago
- ☆56Updated 7 months ago
- ☆13Updated 2 weeks ago
- ☆45Updated last week
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆12Updated 9 months ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated last year
- Spatial direct messaging detected by bivariate Moran☆27Updated this week
- ☆20Updated 3 months ago
- Code used to benchmark Xenium☆64Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Updated last year