ZJUFanLab / scNicheLinks
a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
☆50Updated 5 months ago
Alternatives and similar repositories for scNiche
Users that are interested in scNiche are comparing it to the libraries listed below
Sorting:
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆29Updated last year
- Detect hierarchical structures in cell-cell communications☆16Updated last year
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- ☆47Updated last year
- R implementation of GeneTrajectory☆68Updated last year
- Gene group activity utility functions for Scanpy☆100Updated last year
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆72Updated 7 months ago
- ☆34Updated 3 months ago
- ☆60Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago
- ☆59Updated 2 weeks ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆33Updated last month
- End-to-end analysis of spatial multi-omics data☆102Updated last week
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Updated last year
- RA Synovial Single-cell Multimodal Cell Atlas☆19Updated last year
- ☆129Updated 3 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated last year
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 5 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆64Updated 3 months ago
- Accurate and fast cell marker gene identification with COSG☆54Updated 2 weeks ago
- A tool for semi-automatic cell type harmonization and integration☆118Updated 3 months ago
- Single cell omics biology annotations☆53Updated 9 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Updated 9 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆58Updated 8 months ago
- ☆124Updated last week
- ☆26Updated 10 months ago
- Spatial Cellular Estimator for Tumors☆60Updated last month
- ☆45Updated 2 years ago