Alternatives and similar repositories for SpaRED

Users that are interested in SpaRED are comparing it to the libraries listed below

• maxpmx / HisToGene
  PyTorch implementation of HisToGene
  ☆42Updated 3 years ago
• lugia-xiao / TCGN
  ☆11Updated 8 months ago
• ZhicengShi / mclSTExp
  mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images
  ☆40Updated 9 months ago
• NEXGEM / TRIPLEX
  ☆43Updated 5 months ago
• JiawenChenn / STimage-1K4M
  ☆74Updated 5 months ago
• spatkar94 / HistoTME
  Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)
  ☆21Updated 3 months ago
• Innse / mSTAR
  The official repo of "A Multimodal Knowledge-enhanced Whole-slide Pathology Foundation Model"
  ☆33Updated 3 weeks ago
• AIRMEC / HECTOR
  Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.
  ☆44Updated 10 months ago
• fedshyvana / pathology_mllm_training
  ☆121Updated last year
• mahmoodlab / TANGLE
  Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024
  ☆108Updated last year
• bryanhe / ST-Net
  Deep learning on histopathology images.
  ☆132Updated 4 years ago
• Biooptics2021 / PathFinder
  ☆56Updated 2 years ago
• bowang-lab / BLEEP
  Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
  ☆80Updated last year
• Cassie07 / PathOmics
  [MICCAI 2023 Oral] The official code of "Pathology-and-genomics Multimodal Transformer for Survival Outcome Prediction" (top 9%)
  ☆97Updated 7 months ago
• GuangyuWangLab2021 / Loki
  ☆104Updated 4 months ago
• marrlab / HistoGPT
  A vision language model for gigapixel whole slide images in histopathology
  ☆77Updated last month
• tatonetti-lab / tcga-path-reports
  TCGA Pathology Reports in Machine Readable Text
  ☆52Updated last year
• ZacharyWang-007 / G-HANet
  ☆27Updated last year
• mahmoodlab / MMP
  Multimodal prototyping for cancer survival prediction - ICML 2024
  ☆96Updated 8 months ago
• KatherLab / cancer-metadata
  machine-readable information for the TCGA dataset, mirrored from other sources
  ☆21Updated 3 years ago
• recolyce / HistoCell
  ☆44Updated 6 months ago
• hms-dbmi / MOMA
  MOMA
  ☆53Updated last year
• HKU-MedAI / HIGT
  [MICCAI'23] HIGT: Hierarchical Interaction Graph-Transformer for Whole Slide Image Analysis
  ☆31Updated last year
• MICS-Lab / s4_digital_pathology
  ☆23Updated last year
• biomed-AI / Hist2ST
  ☆46Updated 3 years ago
• whiteyunjie / ROAM
  A transformer-based weakly supervised computational pathology method for clinical-grade diagnosis and molecular state revelation of gliom…
  ☆37Updated 10 months ago
• mahmoodlab / MADELEINE
  MADELEINE: multi-stain slide representation learning (ECCV'24)
  ☆62Updated 8 months ago
• birkhoffkiki / GPFM
  The official implementation of GPFM
  ☆97Updated last month
• KatherLab / EAGLE
  Efficient Approach for Guided Local Examination in Digital Pathology
  ☆27Updated 5 months ago
• bmi-imaginelab / SI-MIL
  SI-MIL
  ☆31Updated 9 months ago