interactivereport / ScaleSCLinks
ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167
☆34Updated last week
Alternatives and similar repositories for ScaleSC
Users that are interested in ScaleSC are comparing it to the libraries listed below
Sorting:
- Identify and correct invalid gene symbols☆59Updated 9 months ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 11 months ago
- ☆22Updated last year
- ☆41Updated 7 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Explore the cancer relevance of your gene list☆51Updated 6 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 5 months ago
- Single-Cell Spatial Explorer☆15Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆50Updated last month
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last week
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- A rust framework to make using alevin-fry even simpler☆57Updated 4 months ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- ☆44Updated 10 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆19Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- scover☆23Updated last year
- Peak caller for CUT&TAG data☆29Updated 3 years ago