interactivereport / ScaleSCLinks
ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167
☆35Updated 3 weeks ago
Alternatives and similar repositories for ScaleSC
Users that are interested in ScaleSC are comparing it to the libraries listed below
Sorting:
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 6 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Signac☆25Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆43Updated last year
- ☆39Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆25Updated 4 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Genomic coordinates of problematic genomic regions as GRanges☆42Updated last month
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Updated 2 weeks ago
- Code for the identification step for CSI-Microbes☆30Updated 9 months ago
- Explore the cancer relevance of your gene list☆52Updated 6 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆111Updated last month
- ☆55Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆56Updated this week
- Clone of the Bioconductor repository for the batchelor package.☆17Updated 6 months ago
- ☆44Updated 10 months ago