ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167
☆40Jan 10, 2026Updated 2 months ago
Alternatives and similar repositories for ScaleSC
Users that are interested in ScaleSC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CompBioAgent: An LLM-powered agent for single-cell RNA-seq data exploration. https://doi.org/10.1101/2025.03.17.643771☆16Apr 25, 2025Updated 11 months ago
- ☆19Jan 10, 2025Updated last year
- scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing. BMC Genomics 24, 228 (2023).☆27Feb 4, 2026Updated 2 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with a…☆14Mar 26, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Scaling Single Cell Analysis to Millions of Cells☆273Jan 13, 2026Updated 2 months ago
- Large language model Mistral for DNA☆21Sep 12, 2025Updated 6 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆94Dec 18, 2024Updated last year
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆48Oct 22, 2025Updated 5 months ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- Serves a web interface and RESTful API for reference genome assets.☆12Feb 25, 2026Updated last month
- Repository for storing prototype functionality implementations for the BKP☆47Updated this week
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆77Nov 13, 2025Updated 4 months ago
- Open-source testing platform where AI agents navigate your app end-to-end and catch regressions on every PR. No test code required.☆58Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- AnnData interoperability in R☆167Apr 2, 2026Updated last week
- ☆16Jan 12, 2026Updated 2 months ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆24Dec 12, 2025Updated 3 months ago
- Python playground for cell-type-specific biology☆12Mar 25, 2026Updated 2 weeks ago
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆12Feb 15, 2022Updated 4 years ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆38Feb 6, 2026Updated 2 months ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 3 months ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆21Dec 16, 2025Updated 3 months ago
- Biwhitened PCA☆15Mar 18, 2026Updated 3 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data☆24Dec 24, 2025Updated 3 months ago
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 7 years ago
- pathway based data integration and visualization☆47Mar 28, 2025Updated last year
- ☆12Aug 30, 2025Updated 7 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆36May 13, 2025Updated 10 months ago
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆42Mar 31, 2026Updated last week
- Clinical interpretation of somatic mutations in cancer☆52Feb 20, 2025Updated last year
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆123Updated this week
- Convert TCR gene names☆15Dec 26, 2025Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆12Apr 13, 2024Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21Oct 30, 2025Updated 5 months ago
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆44Apr 1, 2026Updated last week
- A GenePattern module for running the ssGSEA method☆15Mar 3, 2025Updated last year
- ☆11Sep 11, 2020Updated 5 years ago
- CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…☆24Apr 24, 2023Updated 2 years ago
- Single-cell analysis methods in Rust☆33Nov 4, 2025Updated 5 months ago