ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167
☆41Jan 10, 2026Updated 4 months ago
Alternatives and similar repositories for ScaleSC
Users that are interested in ScaleSC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CompBioAgent: An LLM-powered agent for single-cell RNA-seq data exploration. https://doi.org/10.1101/2025.03.17.643771☆16Apr 25, 2025Updated last year
- ☆22Jan 10, 2025Updated last year
- scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing. BMC Genomics 24, 228 (2023).☆28Feb 4, 2026Updated 4 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18May 19, 2026Updated 3 weeks ago
- SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with a…☆15May 5, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scaling Single Cell Analysis to Millions of Cells☆287May 12, 2026Updated 3 weeks ago
- Large language model Mistral for DNA☆23Sep 12, 2025Updated 8 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆48Oct 22, 2025Updated 7 months ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 5 months ago
- Serves a web interface and RESTful API for reference genome assets.☆12Apr 11, 2026Updated last month
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆82Nov 13, 2025Updated 6 months ago
- Repository for storing prototype functionality implementations for the BKP☆49May 20, 2026Updated 2 weeks ago
- AnnData interoperability in R☆183May 27, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆18May 8, 2026Updated last month
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆12Feb 15, 2022Updated 4 years ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆39Feb 6, 2026Updated 4 months ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 5 months ago
- Python playground for cell-type-specific biology☆14Updated this week
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆33May 27, 2026Updated last week
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 5 months ago
- Biwhitened PCA☆15Mar 18, 2026Updated 2 months ago
- Skip the peaks and expose RNA-binding in CLIP data☆10Apr 29, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data☆28Dec 24, 2025Updated 5 months ago
- CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer☆32Updated this week
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 7 years ago
- pathway based data integration and visualization☆48Mar 28, 2025Updated last year
- ☆12Aug 30, 2025Updated 9 months ago
- Clinical interpretation of somatic mutations in cancer☆53Feb 20, 2025Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆36May 13, 2025Updated last year
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆125Updated this week
- Convert TCR gene names☆15Dec 26, 2025Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆13Jun 2, 2026Updated last week
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆46Apr 1, 2026Updated 2 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21May 4, 2026Updated last month
- A GenePattern module for running the ssGSEA method☆16Mar 3, 2025Updated last year
- ☆11Sep 11, 2020Updated 5 years ago
- CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…☆24Apr 24, 2023Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆43Mar 31, 2022Updated 4 years ago