Awesome generative spatial omics tools
☆23Oct 17, 2025Updated 5 months ago
Alternatives and similar repositories for computer_vision_spatial_omics
Users that are interested in computer_vision_spatial_omics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CAD - Memory Efficient Convolutional Adapter for Segment Anything☆12Oct 4, 2024Updated last year
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆48Oct 22, 2025Updated 5 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Mar 3, 2023Updated 3 years ago
- EP-SAM: Weakly Supervised Histopathology Segmentation via Enhanced Prompt with Segment Anything☆17Dec 9, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 7 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- Blind deconvolution module in python☆20Jun 22, 2012Updated 13 years ago
- ☆18Apr 5, 2024Updated last year
- Convert numpy mask to dicom rtstruct☆13Feb 28, 2023Updated 3 years ago
- UKRIN Kidney Analysis Toolbox☆12Mar 27, 2025Updated last year
- Joelle Barral's gold standard inversion recovery T1 mapping package☆11Apr 14, 2020Updated 5 years ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- ☆15May 30, 2025Updated 9 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆34Oct 10, 2025Updated 5 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆53Aug 11, 2025Updated 7 months ago
- WSI-SAM☆32Oct 3, 2024Updated last year
- Repository in Support of EAGLE Submission☆22Oct 11, 2025Updated 5 months ago
- CUMT 计算机科学与技术 2016版培养方案 课程资源☆10Sep 7, 2022Updated 3 years ago
- Cellular Mitochondrial Analysis☆14Oct 25, 2021Updated 4 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- tipi4icy is a collection of Icy plugins based on TiPi☆11Oct 17, 2023Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Nov 4, 2024Updated last year
- Dataloader for common proteomics search engine outputs into AnnData format☆14Updated this week
- This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task☆17Dec 11, 2024Updated last year
- ☆13Jun 6, 2024Updated last year
- LA-ViT: A Network with Transformers constrained by Learned-parameters-free Attention for Interpretable Grading in A New Laryngeal Histopa…☆17Jun 1, 2025Updated 9 months ago
- ☆14May 28, 2025Updated 10 months ago
- The learning routes of MIL (categorized, key paper listed, continuously updated)☆37Dec 8, 2025Updated 3 months ago
- ☆14Mar 28, 2025Updated last year
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆16Dec 7, 2025Updated 3 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated 11 months ago
- Source codes and trained networks described in the paper: MoDL-QSM: Model-based Deep Learning for Quantitative Susceptibility Mapping☆11May 4, 2024Updated last year
- ☆19Apr 8, 2025Updated 11 months ago
- [Accepted by TNNLS] Source Code for Relational Redundancy-Free Graph Clustering☆13Sep 24, 2023Updated 2 years ago
- A collection of tomographic tools for CT reconstruction in MATLAB☆11Jul 17, 2018Updated 7 years ago
- Palettes and Themes Inspired by Chinese Traditional Colors☆29Oct 4, 2025Updated 5 months ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Apr 13, 2021Updated 4 years ago