Awesome generative spatial omics tools
☆22Oct 17, 2025Updated 4 months ago
Alternatives and similar repositories for computer_vision_spatial_omics
Users that are interested in computer_vision_spatial_omics are comparing it to the libraries listed below
Sorting:
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆46Oct 22, 2025Updated 4 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆50Aug 11, 2025Updated 6 months ago
- CUMT 计算机科学与技术 2016版培养方案 课程资源☆10Sep 7, 2022Updated 3 years ago
- UKRIN Kidney Analysis Toolbox☆12Mar 27, 2025Updated 11 months ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated 10 months ago
- This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task☆16Dec 11, 2024Updated last year
- Joelle Barral's gold standard inversion recovery T1 mapping package☆11Apr 14, 2020Updated 5 years ago
- ☆13Jun 6, 2024Updated last year
- ☆14Mar 28, 2025Updated 11 months ago
- Dataloader for common proteomics search engine outputs into AnnData format☆14Nov 24, 2025Updated 3 months ago
- LA-ViT: A Network with Transformers constrained by Learned-parameters-free Attention for Interpretable Grading in A New Laryngeal Histopa…☆17Jun 1, 2025Updated 9 months ago
- Repository in Support of EAGLE Submission☆22Oct 11, 2025Updated 4 months ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 3 years ago
- tipi4icy is a collection of Icy plugins based on TiPi☆11Oct 17, 2023Updated 2 years ago
- ☆13Mar 29, 2024Updated last year
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆16Dec 7, 2025Updated 3 months ago
- [Accepted by TNNLS] Source Code for Relational Redundancy-Free Graph Clustering☆12Sep 24, 2023Updated 2 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Mar 3, 2023Updated 3 years ago
- ☆14May 28, 2025Updated 9 months ago
- CAD - Memory Efficient Convolutional Adapter for Segment Anything☆12Oct 4, 2024Updated last year
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- Convert numpy mask to dicom rtstruct☆13Feb 28, 2023Updated 3 years ago
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- A collection of tomographic tools for CT reconstruction in MATLAB☆11Jul 17, 2018Updated 7 years ago
- single-cell RNA-seq Clustering via Deep Cut-informed Graph☆14Nov 23, 2025Updated 3 months ago
- Simple Contrastive Multi-View Clustering with Data-Level Fusion☆15Jul 25, 2025Updated 7 months ago
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆12May 18, 2024Updated last year
- Cellular Mitochondrial Analysis☆14Oct 25, 2021Updated 4 years ago
- ☆13Nov 3, 2023Updated 2 years ago
- ☆12Mar 24, 2019Updated 6 years ago
- Tool used to quantify extrachromosomal DNA (ecDNA) in metaphase images stained with DAPI and FISH probes.☆16Mar 3, 2026Updated last week
- Blind deconvolution module in python☆20Jun 22, 2012Updated 13 years ago
- Not just slides - delivery-ready talks☆32Updated this week
- ☆15May 30, 2025Updated 9 months ago
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆32Feb 25, 2026Updated last week
- Palettes and Themes Inspired by Chinese Traditional Colors☆29Oct 4, 2025Updated 5 months ago
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆27Jan 24, 2026Updated last month
- Scripts used for the ACT paper☆12May 6, 2021Updated 4 years ago