Alternatives and similar repositories for SpatialMapESCC

Users that are interested in SpatialMapESCC are comparing it to the libraries listed below

• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆53Updated 7 months ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆53Updated 4 years ago
• bio-Pixel / panVC
  ☆57Updated last year
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated 2 months ago
• wu-yc / neutrophil
  ☆17Updated 2 years ago
• QiangShiPKU / CoVarNet
  ☆54Updated 6 months ago
• Lan-lab / sc-GC
  ☆32Updated 3 years ago
• maximemeylan / Meylan_et_al_2022
  ☆20Updated 4 years ago
• aliceygao / pan-Fibroblast
  ☆57Updated last year
• Banovich-Lab / Spatial_PF
  ☆34Updated 3 months ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆88Updated 3 years ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆74Updated 3 years ago
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆20Updated last year
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆132Updated last year
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆43Updated 2 years ago
• youqiongye / CRC_scRNAseq
  ☆49Updated 3 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 11 months ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆33Updated 3 months ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated last month
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆14Updated 4 years ago
• Chuxj / CRC-atlas
  ☆33Updated last year
• JerryZhang-1222 / starTracer
  A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis
  ☆33Updated last year
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆41Updated last year
• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆22Updated 2 years ago
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆65Updated 3 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆28Updated 3 years ago
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆54Updated last year
• chloelulu / scMayoMap
  ☆25Updated 2 years ago