ratschlab / HistoPlexerLinks
☆16Updated 4 months ago
Alternatives and similar repositories for HistoPlexer
Users that are interested in HistoPlexer are comparing it to the libraries listed below
Sorting:
- ☆45Updated 3 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆58Updated last year
- Deep learning on histopathology images.☆127Updated 3 years ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆81Updated 10 months ago
- Her2 Breast Cancer Project☆84Updated 2 years ago
- ☆42Updated 4 months ago
- ☆93Updated 2 months ago
- Code for the THItoGene☆24Updated 4 months ago
- ☆65Updated 6 months ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆299Updated 3 weeks ago
- Train a model to predict gene expression from histology slides.☆106Updated 3 years ago
- PyTorch implementation of HisToGene☆42Updated 3 years ago
- Accessible and interoperable whole slide image analysis☆129Updated 2 weeks ago
- ☆140Updated 8 months ago
- Foundation Model for Multiplex Spatial Proteomic Images☆78Updated this week
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆33Updated 6 months ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 4 years ago
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆14Updated 2 months ago
- Data and code to accompany our Nature publication☆46Updated 3 years ago
- ☆55Updated 2 years ago
- ☆14Updated last month
- ☆72Updated 3 months ago
- GrandQC tool for tissue detection and quality control in pathology☆61Updated 5 months ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆30Updated 4 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆42Updated 2 months ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆70Updated 6 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- Python 3 library for the augmentation & normalization of H&E images☆58Updated 2 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 7 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆95Updated 5 months ago