ratschlab / HistoPlexerLinks
☆28Updated 10 months ago
Alternatives and similar repositories for HistoPlexer
Users that are interested in HistoPlexer are comparing it to the libraries listed below
Sorting:
- Her2 Breast Cancer Project☆93Updated 3 years ago
- ☆53Updated 3 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆64Updated last year
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆83Updated last year
- Deep learning on histopathology images.☆140Updated 4 years ago
- ☆53Updated 10 months ago
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆129Updated 8 months ago
- ☆158Updated last year
- ☆63Updated 4 months ago
- PyTorch implementation of HisToGene☆52Updated 4 years ago
- ☆19Updated 2 months ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆362Updated this week
- Accessible and interoperable whole slide image analysis☆181Updated last week
- ☆78Updated 8 months ago
- Train a model to predict gene expression from histology slides.☆112Updated 3 years ago
- GrandQC tool for tissue detection and quality control in pathology☆80Updated last month
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆17Updated 7 months ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆33Updated 10 months ago
- Code for the THItoGene☆28Updated 10 months ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 5 years ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆46Updated 9 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆49Updated 8 months ago
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆37Updated 6 months ago
- Data and code to accompany our Nature publication☆48Updated 3 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆80Updated last year
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆44Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Code for ST_IGI package☆34Updated 7 months ago
- ☆72Updated 11 months ago
- ☆44Updated last year