althonos / pyhmmer
Cython bindings and Python interface to HMMER3.
☆136Updated last month
Alternatives and similar repositories for pyhmmer:
Users that are interested in pyhmmer are comparing it to the libraries listed below
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆124Updated 4 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆164Updated 2 weeks ago
- snakemake pipeline for creating trees from sequence sets☆76Updated last month
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 2 months ago
- MMseqs2 app to run on your workstation or servers☆76Updated this week
- Logan Unitigs and Contigs☆127Updated last week
- sensitive and precise assembly of short sequencing reads☆153Updated 6 months ago
- Protein 3D structure prediction pipeline☆79Updated last week
- Transmembrane proteins predicted through Language Model embeddings☆35Updated 2 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆155Updated 7 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆107Updated 5 months ago
- nucleic acid folding☆91Updated 8 months ago
- a pipeline to build similarity maps of protein space☆33Updated 4 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated 3 weeks ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated last month
- Webserver and command line tool for annotating engineered plasmids☆117Updated last month
- Discovery of conserved gene clusters in multiple genomes☆79Updated 3 weeks ago
- UniProt Id Mapping through API☆31Updated 6 months ago
- Protein structure alignment and search algorithm☆59Updated 3 weeks ago
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆241Updated last week
- ☆125Updated 7 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆48Updated last month
- Evolutionary velocity with protein language models☆90Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆100Updated last year
- Phage Annotation using Protein Structures☆103Updated this week
- Automatic oligonucleotide design for PCR-based gene synthesis☆44Updated 5 years ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆21Updated 2 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated last week
- A fast multiple sequence alignment program.☆137Updated 11 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆103Updated 7 months ago