Alternatives and similar repositories for pyhmmer

Users that are interested in pyhmmer are comparing it to the libraries listed below

• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆130Updated 6 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆85Updated 4 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆79Updated 2 weeks ago
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆156Updated 8 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆174Updated last month
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆132Updated 3 weeks ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆155Updated 7 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆80Updated this week
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆121Updated 3 months ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆110Updated 6 months ago
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆34Updated 5 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆36Updated 3 weeks ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆81Updated this week
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆21Updated 2 years ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆79Updated 3 weeks ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆32Updated 8 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆143Updated last year
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆106Updated 9 months ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆109Updated last month
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆31Updated 3 months ago
• KatyBrown / CIAlign
  ☆129Updated 9 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆59Updated this week
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆82Updated 6 months ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆64Updated last year
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆101Updated last year
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆140Updated last week
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆36Updated 9 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆72Updated last month
• antismash / antismash
  antiSMASH
  ☆209Updated last week