althonos / pyhmmer
Cython bindings and Python interface to HMMER3.
☆136Updated this week
Alternatives and similar repositories for pyhmmer:
Users that are interested in pyhmmer are comparing it to the libraries listed below
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆125Updated 5 months ago
- snakemake pipeline for creating trees from sequence sets☆76Updated 2 weeks ago
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 3 months ago
- Logan Unitigs and Contigs☆128Updated last month
- Transmembrane proteins predicted through Language Model embeddings☆35Updated 3 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆169Updated 3 weeks ago
- UniProt Id Mapping through API☆31Updated 7 months ago
- sensitive and precise assembly of short sequencing reads☆155Updated 7 months ago
- MMseqs2 app to run on your workstation or servers☆78Updated 2 weeks ago
- RNA secondary structure/sequence profiles for homology search and alignment☆109Updated 6 months ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆21Updated 2 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated 2 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆101Updated last year
- ☆127Updated 8 months ago
- Protein structure alignment and search algorithm☆59Updated this week
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆156Updated 7 months ago
- Protein 3D structure prediction pipeline☆79Updated this week
- a pipeline to build similarity maps of protein space☆34Updated 5 months ago
- Discovery of conserved gene clusters in multiple genomes☆79Updated last month
- nucleic acid folding☆92Updated 9 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆36Updated 8 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated last week
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆84Updated 2 years ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆104Updated 8 months ago
- Webserver and command line tool for annotating engineered plasmids☆117Updated 2 months ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆41Updated 2 months ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 10 months ago
- Evolutionary velocity with protein language models☆90Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated this week
- Phage Annotation using Protein Structures☆106Updated 3 weeks ago