Alternatives and similar repositories for pyhmmer

Users that are interested in pyhmmer are comparing it to the libraries listed below

• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆153Updated 10 months ago
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆201Updated 2 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆86Updated 2 weeks ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆95Updated 8 months ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆171Updated 3 weeks ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated 2 weeks ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆72Updated last week
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆153Updated last year
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆190Updated last week
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆131Updated 2 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆86Updated last week
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆114Updated 10 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆39Updated 2 months ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆161Updated 11 months ago
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆65Updated last year
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆97Updated 4 months ago
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆25Updated 2 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆78Updated 2 weeks ago
• TimoLassmann / kalign
  A fast multiple sequence alignment program.
  ☆145Updated 3 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆103Updated last month
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆97Updated 2 weeks ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆75Updated 2 months ago
• Arcadia-Science / ProteinCartography
  A pipeline to build similarity maps of protein space
  ☆38Updated last week
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆251Updated 3 weeks ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 6 months ago
• soedinglab / MMseqs
  ☆14Updated 9 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆35Updated this week