cantinilab / Mowgli
Single-cell multi-omics integration using Optimal Transport
☆41Updated 5 months ago
Alternatives and similar repositories for Mowgli:
Users that are interested in Mowgli are comparing it to the libraries listed below
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 2 months ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆29Updated 7 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆36Updated last month
- ☆43Updated 3 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆55Updated 10 months ago
- Regulatory networks with Direct Information in python☆40Updated last year
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆26Updated 3 years ago
- Multimodal Data (.h5mu) implementation for Python☆87Updated this week
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- spatial transcriptome, single cell☆67Updated last year
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆34Updated 2 months ago
- ☆42Updated 3 months ago
- Fit generalized linear models in python.☆27Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆50Updated last month
- Flow & mass cytometry analytics.☆43Updated this week
- Multi-omics factor analysis v2☆40Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆62Updated last year
- ☆20Updated 2 years ago
- Template repository for creating novel models with scvi-tools☆19Updated 2 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆47Updated 7 months ago
- ☆51Updated last year
- Multiview Intercellular SpaTial modeling framework☆51Updated 10 months ago
- Slides and Notebooks for scverse 2024☆17Updated 4 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆31Updated this week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆113Updated 5 months ago
- Unified knowledge-driven network inference from omics data☆31Updated last week
- Work with trained factor models in Python☆31Updated 3 months ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆23Updated last year