Alternatives and similar repositories for pymemesuite

Users that are interested in pymemesuite are comparing it to the libraries listed below

• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆37Updated last month
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆89Updated 5 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆63Updated last week
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆137Updated this week
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆135Updated 7 months ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆15Updated last month
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆34Updated 9 months ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆112Updated 8 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆32Updated last month
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆82Updated 3 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated 2 weeks ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆146Updated last year
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆27Updated 7 months ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆141Updated last week
• nebiolabs / domainator
  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  ☆21Updated 4 months ago
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆33Updated 9 months ago
• VivianMonzon / Reciprocal_Best_Structure_Hits
  ☆11Updated 2 years ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆83Updated last month
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆115Updated 10 months ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆82Updated 2 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆23Updated last month
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆109Updated 2 weeks ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆35Updated 2 years ago
• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆49Updated 3 months ago
• ntranoslab / esm-variants
  ☆74Updated last year
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆73Updated 3 years ago
• LucaOne / LucaPCycle
  We developed a dual-channel model named LucaPCycle, based on the raw sequence and protein language large models, to predict whether a pro…
  ☆23Updated 3 weeks ago
• Merck / bgc-pipeline
  ☆11Updated 7 months ago