Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.
☆18Mar 7, 2026Updated 5 months ago
Alternatives and similar repositories for pymemesuite
Users that are interested in pymemesuite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆64Mar 25, 2026Updated 4 months ago
- Code to build models that effectively predict promoter-driven gene expression☆12May 15, 2025Updated last year
- GPro: a toolbox for Generative approaches in promoter design☆30Mar 8, 2024Updated 2 years ago
- ☆11Jul 21, 2021Updated 5 years ago
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆13Nov 12, 2025Updated 9 months ago
- Empirical Demo of Lineup Points Lost☆12Jul 8, 2021Updated 5 years ago
- A collection of *fold* tools☆23Nov 10, 2022Updated 3 years ago
- A 'time'-like utility for Unix that measures peak memory usage☆18Jun 5, 2024Updated 2 years ago
- Media Forensics one-shot protocol, service wrapper, and basic client tools.☆13Feb 25, 2023Updated 3 years ago
- ☆12May 4, 2021Updated 5 years ago
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Aug 6, 2026Updated last week
- Genomic plot in trellis layout☆43Jan 30, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆29Jul 26, 2026Updated 3 weeks ago
- Liftover VCF files☆19Dec 10, 2016Updated 9 years ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆17Feb 1, 2021Updated 5 years ago
- Better Alignments with Translated HMMER☆27Jul 25, 2026Updated 3 weeks ago
- Moderator Templates for https://www.biostars.org/☆11Apr 15, 2021Updated 5 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated last year
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆40Jul 9, 2024Updated 2 years ago
- collection of bioinformatic scripts☆33May 3, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated last year
- The data and standalone program of ESM-DBP☆10Jun 25, 2024Updated 2 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…☆15Sep 24, 2021Updated 4 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆70Apr 10, 2025Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- fork of dorado that supports S/BLOW5☆13May 29, 2026Updated 2 months ago
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆33Jun 17, 2025Updated last year
- ☆23Jul 5, 2026Updated last month
- Script to automate differential expression analysis using DESeq2, edgeR or limma-voom☆20Aug 22, 2018Updated 7 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆46Mar 24, 2026Updated 4 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 3 months ago
- This project is designed to find the potential modifications in bacterial genomes.☆15Nov 6, 2024Updated last year