althonos / pymemesuiteView external linksLinks
Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.
☆16May 15, 2025Updated 9 months ago
Alternatives and similar repositories for pymemesuite
Users that are interested in pymemesuite are comparing it to the libraries listed below
Sorting:
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆61Dec 4, 2025Updated 2 months ago
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 5 years ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆16Feb 1, 2021Updated 5 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Dec 10, 2025Updated 2 months ago
- Genomic plot in trellis layout☆42Jan 30, 2026Updated 2 weeks ago
- A high-performance search engine for large-scale genomic interval datasets☆19Sep 1, 2021Updated 4 years ago
- A 'time'-like utility for Unix that measures peak memory usage☆18Jun 5, 2024Updated last year
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated last year
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Jun 21, 2022Updated 3 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Apr 13, 2021Updated 4 years ago
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Updated this week
- A command line tool to compute mapping statistics from a BAM file☆25Mar 7, 2022Updated 3 years ago
- ☆18Oct 3, 2025Updated 4 months ago
- ☆28Sep 9, 2024Updated last year
- ☆20Dec 13, 2023Updated 2 years ago
- ☆27Aug 29, 2025Updated 5 months ago
- GPro: a toolbox for Generative approaches in promoter design☆27Mar 8, 2024Updated last year
- A tool for evaluating RNA seq mapping☆22Jul 12, 2019Updated 6 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 6 months ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- ☆28Dec 1, 2022Updated 3 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆30Sep 23, 2022Updated 3 years ago
- Bioinformatics Open Source Sequence machine☆32Aug 29, 2023Updated 2 years ago
- An easy way to run BioNano genomic analysis☆28Apr 9, 2021Updated 4 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Oct 22, 2018Updated 7 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- ☆10Jul 21, 2021Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆94Jan 14, 2026Updated last month
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Jan 5, 2026Updated last month
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Jul 24, 2017Updated 8 years ago
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆12Nov 12, 2025Updated 3 months ago
- ☆12Apr 26, 2020Updated 5 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆13Jan 23, 2026Updated 3 weeks ago
- ☆14Oct 27, 2025Updated 3 months ago