Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.
☆10Jan 11, 2021Updated 5 years ago
Alternatives and similar repositories for genotype-files-manipulations
Users that are interested in genotype-files-manipulations are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts to convert between file formats for various analyses☆16May 10, 2025Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated 2 years ago
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆11Feb 27, 2020Updated 6 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- command-line and python interface to the uniprot database☆10Jun 11, 2015Updated 11 years ago
- ☆12May 13, 2024Updated 2 years ago
- ☆13Apr 30, 2019Updated 7 years ago
- Dix-seq: An integrated pipeline for fast amplicon data analysis☆11Dec 9, 2024Updated last year
- Code accompanying "Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx"☆11Oct 17, 2022Updated 4 years ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 6 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 8 years ago
- Likelihood-based Selective Sweep Detection☆43Oct 12, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆13Sep 3, 2024Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆50Mar 7, 2024Updated 2 years ago
- The Simple Fool's Guide to population genomics using RNA-Seq☆28Jul 8, 2016Updated 10 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 10 months ago
- Selection outlier scan with population branch statistic☆14Feb 21, 2024Updated 2 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Useful bioinformatic scripts☆61Feb 23, 2026Updated 8 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- 7 multi-locus GWAS methods are available to identify QTNs, including BLUPmrMLM (new) that has fast computational speed (similar to EMMAX …☆11Dec 18, 2025Updated 10 months ago
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆20Aug 6, 2025Updated last year
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆38Jun 19, 2020Updated 6 years ago
- ☆19Jan 24, 2018Updated 8 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Working on cotton resequencing☆11Jun 2, 2020Updated 6 years ago
- Scripts for population genetics analysis☆21Nov 10, 2022Updated 3 years ago
- ☆16Jun 30, 2022Updated 4 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- repository of scripts for comparative transcriptome analysis☆20Apr 10, 2019Updated 7 years ago
- IBD based kinship estimation☆16Mar 3, 2023Updated 3 years ago
- Infer demographic history with the Moran model☆52Jun 14, 2025Updated last year
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 3 years ago
- ☆16Jun 14, 2017Updated 9 years ago
- ☆10Jul 19, 2024Updated 2 years ago
- Demographic analysis of Brassica oleracea☆10May 19, 2026Updated 5 months ago