Alternatives and similar repositories for genotype-files-manipulations

Users that are interested in genotype-files-manipulations are comparing it to the libraries listed below

• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆20Updated 6 years ago
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• oeco28 / Cacao_Genomics
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆11Updated 6 years ago
• comery / gVisualization
  issues for semina "Data Visulization"
  ☆13Updated last week
• therkildsen-lab / lcwgs-simulation
  ☆16Updated 3 years ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆16Updated last month
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆18Updated 3 years ago
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆16Updated 3 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated last year
• Iceylee / NGS-Pacbio
  Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.
  ☆9Updated 5 years ago
• ZhaoTingzju / GWAS_script
  Working on cotton resequencing
  ☆11Updated 5 years ago
• thamala / PBScan
  Selection outlier scan with population branch statistic
  ☆13Updated last year
• caulilin / QTG_Seq
  ☆22Updated 6 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆17Updated 6 years ago
• wangzihell / CAU-TibetanWheatSeq
  Customized codes used in Tibetan wheat sequencing project.
  ☆13Updated 2 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆38Updated last year
• yiliao1022 / LASTZ_SV_pipeline
  ☆15Updated 5 years ago
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• wangzihell / IntroBlocker
  The IntroBlocker ancestry inference algorithm
  ☆11Updated last year
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆16Updated 5 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆39Updated 4 years ago
• galikbence / genome_annotation
  Pipeline for eukaryotic genome annotation based on external evidences
  ☆13Updated 2 years ago
• yexinhai / genomics-analysis-pipeline
  Some useful bioinformatics pipelines for genomics analysis
  ☆14Updated 4 years ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆23Updated last year
• HuffordLab / Wang_et_al._Demography
  Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"
  ☆17Updated 4 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆17Updated last week