allanchen95 / ESMPair
Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models
☆14Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for ESMPair
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆32Updated last week
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆10Updated 5 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆42Updated 3 weeks ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆51Updated last year
- scripts to find PBD structures for cancer driver proteins☆29Updated 8 months ago
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆11Updated last year
- Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Modeli…☆15Updated last month
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆30Updated 11 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆40Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆30Updated 5 months ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆25Updated last year
- ☆26Updated 11 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆34Updated 4 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆29Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆51Updated 6 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆26Updated 2 weeks ago
- Structure-conditioned masked language modeling for protein sequence design☆60Updated 9 months ago
- ☆16Updated last month
- dMaSIF implementation for google colab☆29Updated last year
- ☆25Updated 3 months ago
- ☆31Updated 7 months ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆52Updated this week
- ☆38Updated 2 years ago
- Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.☆42Updated 3 weeks ago
- ☆20Updated 2 years ago
- ☆42Updated last year
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆22Updated last year
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆40Updated 2 months ago
- Generative diverse protein backbones by protein language model☆24Updated this week