Alternatives and similar repositories for CloneBO

Users that are interested in CloneBO are comparing it to the libraries listed below

• Wang-lab-UCSD / TUnA
  TUnA: Transformer-based Uncertainty Aware model for PPI Prediction
  ☆10Updated last year
• deskk / AbGPT
  ☆11Updated last year
• ddingding / CoVES
  Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)
  ☆11Updated last year
• liudan111 / PLM-interact
  PLM-interact: extending protein language models to predict protein-protein interactions.
  ☆29Updated last week
• Doudna-lab / GARNET_DL
  ☆36Updated 7 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆51Updated last month
• microsoft / peft_proteomics
  LoRA for protein language models
  ☆41Updated last year
• sokrypton / seqmodels
  ☆32Updated 2 weeks ago
• amirmohan / epistatic-net
  Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…
  ☆18Updated 4 years ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆30Updated 5 months ago
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆38Updated 2 months ago
• navid-naderi / PLM_SWE
  Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"
  ☆20Updated 4 months ago
• wukevin / proteinclip
  Contrastive learning harmonizing protein language models and natural language models
  ☆35Updated last year
• instadeepai / protein-sequence-bfn
  Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
  ☆46Updated 6 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated 2 months ago
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆40Updated last year
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• Exscientia / abodybuilder3
  ☆67Updated 10 months ago
• jas-preet / SPOT-1D-Single
  The standalone version of SPOT-1D-Single available for public use for research purposes.
  ☆24Updated last year
• HySonLab / LatentDE
  LatentDE: Latent-based Directed Evolution for Protein Sequence Design
  ☆36Updated 5 months ago
• IBM / AFDistill
  Code for AlphaFold Distillation for Protein Design
  ☆16Updated last year
• IBM / ReprogBERT
  Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"
  ☆24Updated 2 years ago
• ronboger / conformal-protein-retrieval
  ☆16Updated last week
• aedera / anc2vec
  Unsupervised neural network for learning embeddings of GO terms.
  ☆18Updated 3 years ago
• brennanaba / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆32Updated 2 years ago
• zanderharteveld / genesis
  protein backbone refinement
  ☆15Updated 11 months ago
• pemami4911 / ppde
  Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"
  ☆12Updated 2 years ago
• whatdoidohaha / RFA
  Reference-free analysis of genetic architecture
  ☆18Updated 11 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆53Updated 9 months ago
• Bitbol-Lab / ProtMamba-ssm
  ProtMamba: a homology-aware but alignment-free protein state space model
  ☆78Updated 3 months ago