Alternatives and similar repositories for pssmpro

Users that are interested in pssmpro are comparing it to the libraries listed below

• Lailabcode / DeepViscosity
  DeepViscosity is a deep learning ANN model developed to predict high concentrated monoclonal antibody viscosity classes (Low <= 20cps, Hi…
  ☆18Updated 4 months ago
• IBM / ReprogBERT
  Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"
  ☆24Updated 3 months ago
• csi-greifflab / developability_profiling
  ☆27Updated 4 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆35Updated 2 years ago
• Shen-Lab / CPAC
  [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction
  ☆16Updated last year
• alicetinglab / ConformationalBiasing
  Code for designing biased protein states
  ☆15Updated last month
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆22Updated last month
• LSSI-ETH / meta-learning-for-protein-engineering
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…
  ☆20Updated last year
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated last year
• JocelynSong / NAEPro
  ☆12Updated 2 years ago
• Vincentx15 / atomsurf
  ☆24Updated last month
• matmi8 / Zernike2D
  ☆10Updated 8 months ago
• Gleghorn-Lab / DSM
  Protein representation and design under a single training scheme
  ☆23Updated 2 weeks ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆36Updated 2 years ago
• GIST-CSBL / HoTS
  HoTS: Sequence-based prediction of binding regions and drug-target interactions.
  ☆28Updated 3 years ago
• ddingding / CoVES
  Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)
  ☆11Updated last year
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• oxpig / p-IgGen
  p-IgGen: A Generative Paired Antibody Language Model
  ☆13Updated 7 months ago
• aartikrish / de-novo-antibiotics
  This is the GitHub repository accompanying Krishnan, Anahtar, Valeri, et al., 2025
  ☆34Updated 6 months ago
• Minys233 / Dynaformer
  ☆34Updated last year
• ai4protein / VenusX
  ☆15Updated 3 months ago
• mgreenig / IgCraft
  Versatile human antibody sequence design
  ☆21Updated 7 months ago
• KrishnaswamyLab / ImmunoStruct
  ImmunoStruct enables multimodal deep learning for immunogenicity prediction
  ☆12Updated last month
• Merck / AbLEF
  Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction
  ☆13Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• rdilip / kanzi
  ☆26Updated last month
• ai4protein / VenusMine
  ☆33Updated 6 months ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆21Updated last year
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆23Updated last year
• stracquadaniolab / prevent-nf
  PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion
  ☆13Updated last year