A python tool for numerically encoding protein sequences based on PSSM profile
☆11Jun 25, 2021Updated 5 years ago
Alternatives and similar repositories for pssmpro
Users that are interested in pssmpro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EnzyDock: Protein–Ligand Docking of Multiple Reactive States along a Reaction Coordinate in Enzymes☆18Sep 5, 2024Updated 2 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- ☆10Aug 28, 2024Updated 2 years ago
- EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarity☆14Dec 7, 2021Updated 4 years ago
- A python feature extraction and selection tool for DNA, RNA, Protein sequencing data☆10May 4, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Protein-peptide docking with ESMFold language model☆16May 30, 2026Updated 5 months ago
- ☆12Nov 16, 2023Updated 2 years ago
- Metal Activity Heuristic of Metalloprotein and Enzymatic Sites (MAHOMES) - Predicts if a protein bound metal ion is enzymatic or non-enzy…☆11Apr 19, 2022Updated 4 years ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- ☆17Jan 5, 2024Updated 2 years ago
- ☆14Jun 5, 2024Updated 2 years ago
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆17Jul 30, 2023Updated 3 years ago
- ☆26May 19, 2024Updated 2 years ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆21Mar 8, 2026Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Environment for developing substructure-aware protein models☆16Mar 26, 2026Updated 7 months ago
- deploy yolov5 by Opencv and TensorRT in Python and CPP☆25Mar 23, 2022Updated 4 years ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 7 years ago
- Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"☆13Aug 7, 2023Updated 3 years ago
- CASC Ain't Simply CRT☆11Jul 14, 2021Updated 5 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆25Dec 20, 2024Updated last year
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated 2 years ago
- ☆16Jun 19, 2026Updated 4 months ago
- The BigBind protein-ligand binding dataset (and BayesBind benchmark)☆21Oct 8, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DeepContact Software☆26Jun 16, 2018Updated 8 years ago
- a deep learning architecture for protein-ligand binding affinity prediction☆77Jan 21, 2024Updated 2 years ago
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆16Jun 6, 2024Updated 2 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Mar 21, 2024Updated 2 years ago
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆29Aug 23, 2022Updated 4 years ago
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.☆17Jul 9, 2024Updated 2 years ago
- ☆22Apr 7, 2023Updated 3 years ago
- [AEPP 2022] Machine learning for food security: Principles for transparency and usability☆12Mar 9, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆47Apr 22, 2023Updated 3 years ago
- 16S pipeline using qiime2 created with snakemake☆12Oct 20, 2026Updated last week
- ☆25Jan 4, 2024Updated 2 years ago
- Code for Nanodesigner: resolving the complex-CDR interdependency with iterative refinement paper☆17Updated this week
- Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes☆47May 21, 2020Updated 6 years ago
- heterogeneous BLAST (H-BLAST), a fast parallel search tool for a heterogeneous computer that couples CPUs and GPUs, to accelerate BLASTX…☆12Jun 20, 2018Updated 8 years ago
- ☆29Jul 10, 2020Updated 6 years ago