ykurumida / ab-predictor
test
☆13Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for ab-predictor
- ☆9Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆33Updated 2 months ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆18Updated 5 years ago
- ☆35Updated 11 months ago
- This repo contains the collection of codes to find designer interfacial mutations☆16Updated last year
- ☆45Updated last month
- Automated construction of protein chimeras and their analysis.☆15Updated last year
- Some scripts that I keep using over and over.☆18Updated 8 months ago
- Some Rosetta Scripts that allow for various simple tasks☆13Updated 4 years ago
- Differentiable Pairing using Alignment-based Language Models☆17Updated 10 months ago
- A structure checker in python☆18Updated 7 months ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆15Updated 10 months ago
- a fast and accurate physical energy function extended from EvoEF for protein sequence design☆25Updated last year
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆29Updated 3 years ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆25Updated 2 weeks ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆38Updated last year
- ☆19Updated 2 years ago
- ☆24Updated 3 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆20Updated 4 months ago
- dMaSIF implementation for google colab☆29Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆30Updated 5 months ago
- PyDock Tutorial☆30Updated 6 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆24Updated 7 months ago
- An antibody-specific language model focusing on NGL prediction☆21Updated 3 months ago
- Augmenting zero-shot mutant prediction by retrieval-based logits fusion.☆20Updated last week
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆23Updated 4 months ago
- Making Protein folding accessible to all!☆18Updated 10 months ago
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆25Updated 2 years ago
- Tutorial files☆11Updated 3 months ago
- De novo design of small molecule binding sites into proteins☆13Updated 3 years ago