Alternatives and similar repositories for meta-learning-for-protein-engineering

Users that are interested in meta-learning-for-protein-engineering are comparing it to the libraries listed below

• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆22Updated 2 years ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆34Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 10 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 9 months ago
• Minys233 / Dynaformer
  ☆30Updated last year
• HannesStark / CodonMPNN
  ☆28Updated 7 months ago
• Marco-Peg / GEP
  ☆15Updated last year
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated 11 months ago
• Graylab / MaskedProteinEnT
  ☆12Updated 8 months ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆26Updated last year
• johnyang101 / pmpnndiff
  Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion
  ☆17Updated last year
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆39Updated last year
• csi-greifflab / developability_profiling
  ☆23Updated 7 months ago
• zzhangzzhang / pLMs-interpretability
  ☆28Updated 9 months ago
• brennanaba / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆32Updated 2 years ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆45Updated 6 months ago
• IBM / ReprogBERT
  Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"
  ☆24Updated 2 years ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆30Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 2 months ago
• luwei0917 / BindingGYM
  ☆26Updated last week
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆19Updated last month
• 3BioCompBio / RSALOR
  ☆33Updated last week
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated last year
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆46Updated last month
• Profluent-Internships / ProCALM
  A conditionally adapted protein language model for the generation of enzymes
  ☆22Updated 8 months ago
• Vincentx15 / atomsurf
  ☆19Updated 2 months ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆15Updated 4 months ago
• Croydon-Brixton / proteinmpnn_wrapper
  A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files
  ☆11Updated last year
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆44Updated 8 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆55Updated last month