Evaluating Protein Binding Interfaces with Transformer Networks
☆46Oct 24, 2023Updated 2 years ago
Alternatives and similar repositories for piston
Users that are interested in piston are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Dec 2, 2024Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆14Jul 9, 2025Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆135Feb 26, 2025Updated last year
- Machine learning-driven antibody design☆65Jul 5, 2023Updated 3 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆63Jun 17, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆65Apr 9, 2024Updated 2 years ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆331Jun 13, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- ☆110Apr 1, 2023Updated 3 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆370Jun 29, 2023Updated 3 years ago
- ☆38Dec 21, 2023Updated 2 years ago
- Masif seed paper repository☆174Sep 22, 2025Updated last year
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 6 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for ColabDock paper☆158May 1, 2025Updated last year
- ☆21Nov 21, 2025Updated 10 months ago
- The first large protein language model trained follows structure instructions.☆101May 20, 2025Updated last year
- ☆418Aug 7, 2024Updated 2 years ago
- Reinforcement learning based cyclic peptide binder design☆20Jul 22, 2025Updated last year
- ☆47Apr 12, 2024Updated 2 years ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆113May 25, 2025Updated last year
- ☆47Sep 16, 2024Updated 2 years ago
- ☆10Mar 10, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Assessing the impact of mutations on antibody-antigen binding affinity☆18Dec 7, 2020Updated 5 years ago
- A cyclic peptide-protein complex dataset derived from AFDB.☆68Mar 17, 2026Updated 6 months ago
- Making Protein Design accessible to all via Google Colab!☆942Aug 28, 2026Updated 3 weeks ago
- ☆118Jan 3, 2026Updated 8 months ago
- Graph Network for protein-protein interface☆122Mar 22, 2024Updated 2 years ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆429Feb 26, 2026Updated 6 months ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Jun 27, 2025Updated last year
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆12Jul 18, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Structure prediction and design of proteins with noncanonical amino acids☆147Feb 1, 2026Updated 7 months ago
- ☆144Aug 8, 2024Updated 2 years ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆173Oct 11, 2023Updated 2 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆778Jun 19, 2024Updated 2 years ago
- ☆42Feb 28, 2022Updated 4 years ago
- ☆535Mar 5, 2026Updated 6 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆69Aug 26, 2025Updated last year