Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
β63Jun 17, 2024Updated 2 years ago
Alternatives and similar repositories for RDE-PPI
Users that are interested in RDE-PPI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- βπ» Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)β370Jun 29, 2023Updated 3 years ago
- The Rosetta Bio-macromolecule modeling package.β12Jul 9, 2025Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)β37Dec 11, 2023Updated 2 years ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.β112Apr 7, 2023Updated 3 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"β135Feb 26, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.β38Nov 7, 2024Updated last year
- β101Oct 15, 2024Updated 2 years ago
- open source repositoryβ149Nov 30, 2023Updated 2 years ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packingβ93Dec 4, 2023Updated 2 years ago
- Evaluating Protein Binding Interfaces with Transformer Networksβ46Oct 24, 2023Updated 3 years ago
- The code for NeurIPS 2023 paper DSRβ14Oct 8, 2023Updated 3 years ago
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactionsβ17Jul 30, 2023Updated 3 years ago
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (ICβ¦β15Apr 24, 2024Updated 2 years ago
- Masif seed paper repositoryβ174Sep 22, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer β’ AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- β38Dec 21, 2023Updated 2 years ago
- Aligning protein generative models with experimental fitnessβ155Mar 12, 2026Updated 7 months ago
- Dataset and package for working with protein-protein interactions in 3Dβ110Sep 19, 2026Updated last month
- MaSIF-neosurf: surface-based protein design for ternary complexes.β181Jun 25, 2026Updated 4 months ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"β56Nov 14, 2023Updated 2 years ago
- β37Jan 15, 2023Updated 3 years ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative modelβ311Dec 23, 2025Updated 10 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Modelsβ433Feb 26, 2026Updated 8 months ago
- β110Apr 1, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Official repository for discrete Walk-Jump Sampling (dWJS)β62Jun 3, 2024Updated 2 years ago
- Official repository of "Multi-level Interaction Modeling for Protein Mutational Effect Prediction"β11Jun 30, 2024Updated 2 years ago
- β221Sep 24, 2024Updated 2 years ago
- Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transformsβ34Dec 8, 2023Updated 2 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"β137Nov 19, 2025Updated 11 months ago
- Fast protein backbone generation with SE(3) flow matching.β328Jul 19, 2024Updated 2 years ago
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"β96Dec 29, 2023Updated 2 years ago
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.β47Nov 14, 2025Updated 11 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!β568Sep 9, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A PyTorch implementation of GCN with mutual attention for protein-protein interaction predictionβ61Aug 7, 2021Updated 5 years ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generationβ299Dec 10, 2024Updated last year
- Protein Design with Guided Discrete Diffusionβ144Feb 21, 2024Updated 2 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attentionβ49May 22, 2025Updated last year
- β84Jun 29, 2025Updated last year
- β80Feb 26, 2024Updated 2 years ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.β102Jul 29, 2024Updated 2 years ago