RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction
☆43Jul 22, 2026Updated this week
Alternatives and similar repositories for RNAGym
Users that are interested in RNAGym are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated 2 years ago
- Official repository for the paper "Evaluating variant effect prediction across viruses"☆21Mar 30, 2026Updated 3 months ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆36Jun 11, 2026Updated last month
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆64Aug 2, 2024Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆386May 27, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆13Updated this week
- Official repository for the ProteinGym benchmarks☆451Mar 25, 2026Updated 3 months ago
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆54Jun 5, 2026Updated last month
- ☆42Mar 16, 2026Updated 4 months ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- ☆52Mar 22, 2026Updated 4 months ago
- ☆34Jun 9, 2026Updated last month
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆17Jul 30, 2023Updated 2 years ago
- PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data☆19Feb 21, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNAGenesis: A Generalist Foundation Model for Functional RNA Therapeutics☆33Jun 28, 2026Updated 3 weeks ago
- A conda-smithy repository for ambertools.☆12Jul 15, 2026Updated last week
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆72Aug 13, 2025Updated 11 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆183Updated this week
- AbBiBench (Antibody Binding Benchmarking), a benchmarking framework for optimizing antibody binding affinity.☆42May 14, 2026Updated 2 months ago
- ☆42Jul 28, 2025Updated 11 months ago
- RiboNucleic Acid (RNA) Language Model☆169May 4, 2026Updated 2 months ago
- Fitness landscape exploration sandbox for biological sequence design.☆175Feb 16, 2023Updated 3 years ago
- Official Bioclaw Skills (bioskills) Library for Bioinformatics and Omics Workflows☆24Apr 13, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Docker image as base for building full MAKER image☆11Feb 28, 2022Updated 4 years ago
- Pathogenfinder2☆18Apr 20, 2026Updated 3 months ago
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆310Dec 16, 2025Updated 7 months ago
- Chemical Science 2023: An equivariant generative framework for molecular graph-structure Co-design☆10Jun 18, 2023Updated 3 years ago
- Advanced tutorials for WESTPA 2.0☆16Feb 27, 2026Updated 4 months ago
- MSA Transformer reproduction code☆92Oct 21, 2021Updated 4 years ago
- ☆114Updated this week
- ☆22Dec 20, 2024Updated last year
- Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Design Algorithms"☆27Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆94Oct 9, 2024Updated last year
- Tutorials and additional documentation for the WESTPA suite☆16Oct 20, 2025Updated 9 months ago
- Tutorials for non-Markovian dynamic models (qMSM and IGME) to study protein dynamics.☆27Aug 15, 2024Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆146May 19, 2026Updated 2 months ago
- Different run and analysis scripts as described in the research guides.☆14Jul 5, 2022Updated 4 years ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆129Dec 10, 2025Updated 7 months ago
- RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Ka…☆91Jun 5, 2026Updated last month