RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction
☆39Feb 25, 2026Updated 2 months ago
Alternatives and similar repositories for RNAGym
Users that are interested in RNAGym are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12May 13, 2026Updated last week
- RNAGenesis: A Generalist Foundation Model for Functional RNA Therapeutics☆33Apr 20, 2026Updated 3 weeks ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated last year
- ☆17Jun 22, 2024Updated last year
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆34Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A conda-smithy repository for ambertools.☆11Apr 23, 2026Updated 3 weeks ago
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆17Jul 30, 2023Updated 2 years ago
- Differentiable RNA folding in JAX☆29Mar 25, 2025Updated last year
- Advanced tutorials for WESTPA 2.0☆16Feb 27, 2026Updated 2 months ago
- RNA Multiple Sequence Alignment☆51Jul 20, 2023Updated 2 years ago
- ☆22Dec 20, 2024Updated last year
- Different run and analysis scripts as described in the research guides.☆14Jul 5, 2022Updated 3 years ago
- ☆12Apr 6, 2024Updated 2 years ago
- Injecting watermarks to protein sequences for privacy protection in biosecurity☆10Oct 1, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- Tutorials and additional documentation for the WESTPA suite☆16Oct 20, 2025Updated 7 months ago
- ☆18May 15, 2025Updated last year
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16May 4, 2026Updated 2 weeks ago
- ☆24Apr 10, 2026Updated last month
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Jun 26, 2023Updated 2 years ago
- HELM2NotationToolkit is the reference implementation of the new HELM 2 standard with support for ambiguous structures.☆11May 24, 2023Updated 2 years ago
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆92Nov 11, 2025Updated 6 months ago
- ☆78Apr 22, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Re-implementation of GP-GOMEA that attempts to be simpler to understand and use than the original.☆15Mar 31, 2026Updated last month
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)☆38Sep 3, 2025Updated 8 months ago
- Implementation of Tranception, an attention network, paired with retrieval, that is SOTA for protein fitness prediction☆32Jun 19, 2022Updated 3 years ago
- Code for Online Graph Dictionary Learning☆18Mar 1, 2022Updated 4 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Oct 28, 2023Updated 2 years ago
- Draw RNA secondary structures in python.☆52Jun 24, 2025Updated 10 months ago
- A Modular Architecture for Deep Learning Systems☆55May 23, 2025Updated 11 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆33Nov 22, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Official Pytorch implementation of IJCAI'21 paper "GraphMI: Extracting Private Graph Data from Graph Neural Networks"☆13Nov 19, 2021Updated 4 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65May 8, 2026Updated last week
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆62Aug 2, 2024Updated last year
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆13Jun 28, 2024Updated last year
- Implementation of FoldMark: Safeguarding Protein Structure Generative Models with Distributional and Evolutionary Watermarking☆24Apr 19, 2026Updated last month
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆63Jun 17, 2024Updated last year
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 2 years ago