aidenlab / juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
☆433Updated 3 months ago
Alternatives and similar repositories for juicer:
Users that are interested in juicer are comparing it to the libraries listed below
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆395Updated 11 months ago
- Application for making ENCODE Blacklists☆294Updated 3 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆393Updated last week
- RNA-seq workflow using STAR and DESeq2☆337Updated 7 months ago
- Plot structural variant signals from many BAMs and CRAMs☆540Updated 8 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆458Updated 2 weeks ago
- parallel fastq-dump wrapper☆288Updated last year
- Visualization and analysis software for Hi-C data -☆251Updated 7 months ago
- A collection of tools for Hi-C data analysis☆570Updated last month
- This Snakemake pipeline implements the GATK best-practices workflow☆248Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆239Updated 3 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆206Updated this week
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆323Updated 3 weeks ago
- Intro to ChIPseq using HPC☆299Updated 2 years ago
- Fast genome-wide functional annotation through orthology assignment☆596Updated 10 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆430Updated last year
- ATAC-seq peak-calling and QC analysis pipeline☆196Updated this week
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆409Updated 2 months ago
- ENCODE ATAC-seq pipeline☆404Updated 7 months ago
- GTEx & TOPMed data production and analysis pipelines☆357Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆262Updated last year
- Transcript assembly and quantification for RNA-Seq☆417Updated 3 weeks ago
- SUPPA: Fast quantification of splicing and differential splicing☆271Updated 8 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆233Updated 4 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆504Updated 3 weeks ago
- Tools to process and analyze deep sequencing data.☆703Updated this week
- Quick mining and visualization of NGS data by integrating genomic databases☆264Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆400Updated 2 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆266Updated last month