aidenlab / juicerLinks
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
☆467Updated 2 months ago
Alternatives and similar repositories for juicer
Users that are interested in juicer are comparing it to the libraries listed below
Sorting:
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆426Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆434Updated 3 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆455Updated last year
- Structural variation caller using third generation sequencing☆624Updated last week
- parallel fastq-dump wrapper☆299Updated 2 years ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆531Updated 2 months ago
- Plot structural variant signals from many BAMs and CRAMs☆555Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆492Updated 2 weeks ago
- Tools to process and analyze deep sequencing data.☆742Updated 3 months ago
- Structural variant and indel caller for mapped sequencing data☆450Updated last month
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆541Updated 2 months ago
- Visualization and analysis software for Hi-C data -☆277Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆274Updated 2 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated 4 months ago
- Strelka2 germline and somatic small variant caller☆387Updated 3 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆446Updated 10 months ago
- A collection of tools for Hi-C data analysis☆620Updated 2 weeks ago
- Graph-based alignment (Hierarchical Graph FM index)☆519Updated 2 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆529Updated 4 months ago
- Transcript assembly and quantification for RNA-Seq☆471Updated last week
- An accurate GFF3/GTF lift over pipeline☆514Updated 2 years ago
- ☆274Updated last month
- Application for making ENCODE Blacklists☆327Updated 4 years ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆393Updated 2 weeks ago
- TransDecoder source☆298Updated last month
- Haplotype VCF comparison tools☆450Updated last year
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated last week
- RNA-seq workflow using STAR and DESeq2☆346Updated 2 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆698Updated 8 months ago