aidenlab / juicerLinks
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
☆456Updated 9 months ago
Alternatives and similar repositories for juicer
Users that are interested in juicer are comparing it to the libraries listed below
Sorting:
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆419Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆431Updated 3 weeks ago
- parallel fastq-dump wrapper☆298Updated 2 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated 2 weeks ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆450Updated last year
- A collection of tools for Hi-C data analysis☆605Updated last month
- Transcript assembly and quantification for RNA-Seq☆459Updated last week
- Visualization and analysis software for Hi-C data -☆269Updated last year
- Tools to process and analyze deep sequencing data.☆734Updated last month
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆523Updated 5 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆484Updated 2 weeks ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆429Updated 8 months ago
- Application for making ENCODE Blacklists☆317Updated 4 years ago
- ENCODE ATAC-seq pipeline☆427Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆279Updated last year
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆218Updated last month
- Structural variation caller using third generation sequencing☆612Updated this week
- An accurate GFF3/GTF lift over pipeline☆498Updated 2 years ago
- ☆272Updated 9 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆273Updated last year
- Intro to ChIPseq using HPC☆310Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆257Updated 2 years ago
- Strelka2 germline and somatic small variant caller☆377Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆835Updated last year
- STAR-Fusion codebase☆244Updated 2 weeks ago
- Graph-based alignment (Hierarchical Graph FM index)☆509Updated 9 months ago
- Documentation for the ANNOVAR software☆245Updated last month
- Tools for handling Unique Molecular Identifiers in NGS data sets☆517Updated last month