A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
☆488Aug 31, 2025Updated last year
Alternatives and similar repositories for juicer
Users that are interested in juicer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆444Mar 28, 2024Updated 2 years ago
- Visualization and analysis software for Hi-C data -☆303Aug 6, 2024Updated 2 years ago
- 3D de novo assembly (3D DNA) pipeline☆229Nov 29, 2023Updated 2 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆276Jul 17, 2025Updated last year
- A collection of tools for Hi-C data analysis☆652Jul 18, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The tools for your .cool's☆169Mar 19, 2026Updated 5 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆190Jul 13, 2020Updated 6 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆96Aug 29, 2022Updated 4 years ago
- A cool place to store your Hi-C☆243Aug 24, 2026Updated last week
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆112Nov 12, 2025Updated 9 months ago
- HiC uniform processing pipeline☆67Nov 8, 2023Updated 2 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- A modular Hi-C mapping pipeline☆105Dec 5, 2024Updated last year
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Extract data quickly from Juicebox via straw☆70Apr 6, 2025Updated last year
- Hi-C data processing pipeline☆41Feb 27, 2024Updated 2 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆138Jul 29, 2026Updated last month
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- FAN-C: Framework for the ANalysis of C-like data☆120Mar 13, 2024Updated 2 years ago
- Yet another Hi-C scaffolding tool☆183Nov 4, 2024Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆808May 31, 2026Updated 3 months ago
- Mapping pipeline for data generated using Arima-HiC☆85May 22, 2024Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆68Jun 7, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆214May 19, 2018Updated 8 years ago
- The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)☆80Oct 12, 2018Updated 7 years ago
- Fast alignment and preprocessing of chromatin profiles☆226Mar 20, 2026Updated 5 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 4 years ago
- OLD REPOSITORY - Go to☆31Feb 6, 2018Updated 8 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆94Jan 28, 2025Updated last year
- Extensive de-novo TE Annotator☆469Jul 16, 2026Updated last month
- PASA software☆204Feb 12, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆121Jan 8, 2026Updated 7 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆898Updated this week
- ☆20Jun 8, 2023Updated 3 years ago
- Statistically Significant loops from HiChIP data☆47Apr 17, 2024Updated 2 years ago
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆30Aug 13, 2021Updated 5 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 4 years ago
- ☆88Jul 12, 2024Updated 2 years ago