Visualization and analysis software for Hi-C data -
☆301Aug 6, 2024Updated last year
Alternatives and similar repositories for Juicebox
Users that are interested in Juicebox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆486Aug 31, 2025Updated 10 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆443Mar 28, 2024Updated 2 years ago
- 3D de novo assembly (3D DNA) pipeline☆228Nov 29, 2023Updated 2 years ago
- Extract data quickly from Juicebox via straw☆70Apr 6, 2025Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆275Jul 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆95Aug 29, 2022Updated 3 years ago
- The tools for your .cool's☆167Mar 19, 2026Updated 4 months ago
- A collection of tools for Hi-C data analysis☆648Updated this week
- A cool place to store your Hi-C☆241Updated this week
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated 2 years ago
- FAN-C: Framework for the ANalysis of C-like data☆121Mar 13, 2024Updated 2 years ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆70Jul 7, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆118Jan 8, 2026Updated 6 months ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆50Jan 16, 2024Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Jun 7, 2019Updated 7 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆790May 31, 2026Updated last month
- A modular Hi-C mapping pipeline☆105Dec 5, 2024Updated last year
- k-mer based assembly evaluation☆351Jul 6, 2026Updated 2 weeks ago
- Poisson-based algorithm for stable inference of DNA Structure☆41Updated this week
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆190Jul 13, 2020Updated 6 years ago
- ☆25May 14, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆36Nov 25, 2024Updated last year
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆83Jan 24, 2025Updated last year
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 4 years ago
- HiC uniform processing pipeline☆66Nov 8, 2023Updated 2 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆895Jul 10, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple web browser to visualize HiC tracks☆19Dec 12, 2019Updated 6 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆241Jun 24, 2026Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆135Feb 3, 2026Updated 5 months ago
- 4C-seq processing pipeline☆28Mar 17, 2025Updated last year
- ☆78Dec 4, 2019Updated 6 years ago
- Fast alignment and preprocessing of chromatin profiles☆225Mar 20, 2026Updated 4 months ago