mingchen-li / ProteinPretrainingLinks
Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.
☆33Updated 5 months ago
Alternatives and similar repositories for ProteinPretraining
Users that are interested in ProteinPretraining are comparing it to the libraries listed below
Sorting:
- The first large protein language model trained follows structure instructions.☆87Updated 5 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆95Updated 9 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆77Updated 5 months ago
- ☆76Updated 8 months ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆42Updated 7 months ago
- Official implementation of "Learning the language of protein structures"☆39Updated 4 months ago
- Official repository of ReactZyme☆36Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆45Updated 10 months ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated last year
- ☆32Updated last year
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆25Updated 5 months ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆140Updated 5 months ago
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆68Updated 4 months ago
- VenusFSFP: Few-Shot Protein Fitness Prediction☆99Updated 2 months ago
- ☆80Updated 5 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 5 months ago
- ☆22Updated 11 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆70Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆120Updated 8 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated 2 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆119Updated 7 months ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆41Updated last year
- ☆92Updated 3 weeks ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆110Updated 2 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- ☆45Updated 4 months ago
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆40Updated 4 months ago
- ☆56Updated 3 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated last year
- ProtMamba: a homology-aware but alignment-free protein state space model☆79Updated 4 months ago