Alternatives and similar repositories for ProteinPretraining

Users that are interested in ProteinPretraining are comparing it to the libraries listed below

• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆84Updated 2 months ago
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆91Updated 7 months ago
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆71Updated 2 months ago
• elttaes / Revisiting-PLMs
  Exploring Evolution-aware & free protein language models as protein function predictors
  ☆63Updated 10 months ago
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆37Updated last month
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆114Updated 5 months ago
• zhengkangjie / ESM-AA
  ☆74Updated 6 months ago
• THUDM / MSAGPT
  MSAGPT
  ☆35Updated 8 months ago
• EDAPINENUT / GeoAB
  This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
  ☆40Updated last year
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated 9 months ago
• programmablebio / ptm-mamba
  ☆77Updated 2 months ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆62Updated 2 months ago
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆75Updated 3 months ago
• bzho3923 / ProtLGN
  ☆31Updated last year
• shichence / ProtSeed
  Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"
  ☆24Updated last year
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆65Updated last year
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆69Updated last month
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆36Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆103Updated this week
• KyGao / ABGNN
  PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
  ☆53Updated last year
• ai4protein / ProSST
  🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
  ☆130Updated 2 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• divnori / rnaflow
  RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
  ☆65Updated last year
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆79Updated 3 weeks ago
• tyang816 / SES-Adapter
  🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…
  ☆24Updated 2 months ago
• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆33Updated 2 years ago
• BorgwardtLab / PST
  Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
  ☆44Updated 9 months ago
• IntelliGen-AI / IntelliFold
  IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.
  ☆130Updated 3 weeks ago
• ai4protein / Pro-FSFP
  Pro-FSFP: Few-Shot Protein Fitness Prediction
  ☆91Updated 2 months ago