Predicting mutational effects on protein binding from folding energy. ICML 2025.
☆46Aug 4, 2025Updated 11 months ago
Alternatives and similar repositories for StaB-ddG
Users that are interested in StaB-ddG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Nov 28, 2025Updated 7 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆142Nov 11, 2025Updated 7 months ago
- Code for "Calibrating Generative Models" by Henry Smith, Nathaniel Diamant, and Brian Trippe☆44Jun 18, 2026Updated 2 weeks ago
- [ICLR 2025 Spotlight] Boltzmann-Aligned Inverse Folding Model as a Predictor of Mutational Effects on Protein-Protein Interactions☆45Mar 10, 2025Updated last year
- Versatile human antibody sequence design☆22Apr 12, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆69May 28, 2026Updated last month
- Official repository for the paper "Peptide design through binding interface mimicry with PepMimic" accepted by Nature Biomedical Engineer…☆37Oct 20, 2025Updated 8 months ago
- ☆42Jul 28, 2025Updated 11 months ago
- Energy-guided binder design pipeline built on BindCraft☆18Jun 6, 2025Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆64May 21, 2025Updated last year
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- Fitness landscapes for antibodies☆181May 12, 2026Updated last month
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆69Jun 4, 2026Updated last month
- Extension of ThermoMPNN for double mutant predictions☆63Mar 23, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆25Dec 11, 2024Updated last year
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆27Sep 13, 2024Updated last year
- Disordered protein ensemble prediction☆14Jun 11, 2026Updated 3 weeks ago
- Protein stability prediction using rewired protein generative models☆85May 26, 2026Updated last month
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆24Apr 10, 2026Updated 2 months ago
- Origin-1: a generative AI platform for de novo antibody design against novel epitopes☆79May 2, 2026Updated 2 months ago
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆87Apr 21, 2026Updated 2 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆267Jul 24, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Prediction of Antibody CDR and protein loop flexibility☆17Sep 17, 2025Updated 9 months ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆255Nov 5, 2025Updated 7 months ago
- ☆48Mar 7, 2026Updated 3 months ago
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆43Jun 12, 2026Updated 3 weeks ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Apr 23, 2026Updated 2 months ago
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆49Nov 4, 2025Updated 8 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆125Apr 16, 2025Updated last year
- ☆88Oct 23, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide☆28Mar 30, 2023Updated 3 years ago
- A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files☆13Apr 29, 2024Updated 2 years ago
- AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks☆40Jun 4, 2025Updated last year
- Source code of Venus-MAXWELL: Efficient Learning of Protein-Mutation Stability Landscapes using Protein Language Models☆25Jun 3, 2025Updated last year
- Official implementation for our paper: Repurposing AlphaFold3-like Protein Folding Models for Antibody Sequence and Structure Co-design☆47Jan 8, 2026Updated 5 months ago
- Rank binders by structure modeling☆17Apr 10, 2026Updated 2 months ago
- ☆16Dec 10, 2024Updated last year