A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files
☆12Apr 29, 2024Updated 2 years ago
Alternatives and similar repositories for proteinmpnn_wrapper
Users that are interested in proteinmpnn_wrapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Fast, Simplified Model for Molecular Generation with Improved Physical Quality☆28Oct 1, 2025Updated 10 months ago
- Code and notebook for our paper "Assessing interaction recovery of predicted protein-ligand poses"☆23Oct 2, 2024Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- ☆12Apr 6, 2024Updated 2 years ago
- Potts model-based protein sequence design☆110Jul 1, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)☆38Feb 17, 2025Updated last year
- Score-based 3D molecule generation with neural fields - NeurIPS 2024☆27Dec 3, 2024Updated last year
- Energy minimization post-processing used in PoseBusters☆14Apr 4, 2025Updated last year
- It's a package for evaluation of predicted poses, right?☆78Jul 13, 2026Updated last month
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆23Jun 26, 2023Updated 3 years ago
- ☆18Mar 14, 2026Updated 5 months ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- Integrative protein sequence design with evolutionary multiobjective optimization.☆13Jul 16, 2024Updated 2 years ago
- Bias-controlled 3D generative framework for structure-based ligand design☆17Nov 2, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆58May 26, 2026Updated 2 months ago
- A drop-in replacement for Rosetta Relax☆30Jan 30, 2026Updated 6 months ago
- ☆37Sep 21, 2023Updated 2 years ago
- 🧬 - Data management and modeling framework based on EnzymeML.☆26Jul 23, 2026Updated 3 weeks ago
- Training materials and accompanying documentation for "Mastering Transformers: From Building Blocks to Real World Applications" training.☆13Sep 13, 2023Updated 2 years ago
- A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…☆83Jul 21, 2026Updated 3 weeks ago
- A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.☆61Sep 6, 2022Updated 3 years ago
- ☆10Nov 10, 2023Updated 2 years ago
- TMol☆85Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Extension of ThermoMPNN for double mutant predictions☆65Mar 23, 2026Updated 4 months ago
- Chroma Protein Diffusion Model☆12Nov 16, 2023Updated 2 years ago
- Metal and Water prediction☆16Feb 5, 2025Updated last year
- Profluent-E1 family of Protein Encoder Models☆114Mar 11, 2026Updated 5 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆271Jul 24, 2025Updated last year
- Python implementation for Combining Latent Space and Structured Kernels for Bayesian Optimization over Combinatorial Spaces.☆13Nov 30, 2021Updated 4 years ago
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆83May 1, 2026Updated 3 months ago
- Shrinking Proteins with Diffusion☆31Jan 8, 2026Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆34Feb 5, 2025Updated last year
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆29Mar 8, 2025Updated last year
- Curated list on Deep Transformers Applications on Biology and Chemistry☆19Apr 8, 2023Updated 3 years ago
- A 3D-equivariant neural network for protein structure accuracy estimation☆22Feb 24, 2023Updated 3 years ago
- Pose checks for 3D Structure-based Drug Design methods☆100Nov 3, 2024Updated last year
- Official code release for Ambient Protein Diffusion☆35Aug 30, 2025Updated 11 months ago
- few-shot compound activity regression☆12Aug 19, 2024Updated last year