Croydon-Brixton / proteinmpnn_wrapperLinks
A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files
☆11Updated last year
Alternatives and similar repositories for proteinmpnn_wrapper
Users that are interested in proteinmpnn_wrapper are comparing it to the libraries listed below
Sorting:
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆46Updated 7 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated 2 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated 3 months ago
- ☆28Updated 8 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆44Updated 9 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆28Updated this week
- Implementation of Protein Invariant Point Packer (PIPPack)☆35Updated last year
- A benchmark for 3D biomolecular structure prediction models☆64Updated 3 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 9 months ago
- Extension of ThermoMPNN for double mutant predictions☆42Updated 3 weeks ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated last year
- ☆38Updated 11 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- protein structure generation with sparse all-atom denoising models☆35Updated 3 weeks ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆15Updated 2 weeks ago
- ☆33Updated 2 years ago
- ☆28Updated 6 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆16Updated 5 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆40Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- PoseX: A Molecular Docking Benchmark☆47Updated last month
- ☆13Updated 3 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆48Updated 2 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆56Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆80Updated last year
- workflow used to prepare PPB-Affinity database☆27Updated last year
- ☆70Updated 5 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆57Updated 2 weeks ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆38Updated 4 years ago