Cython implementation of PDB -> DataFrame parsing
☆34Oct 27, 2026Updated this week
Alternatives and similar repositories for CPDB
Users that are interested in CPDB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metrics for assessing 3D molecular structures.☆11May 9, 2026Updated 5 months ago
- HInt (Homologous Interactions)☆10Updated this week
- Paste a protein sequence, get an a3m. Borrows AlphaFold DB's precomputed MSAs instead of running a search.☆11Aug 8, 2026Updated 2 months ago
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆47Nov 14, 2025Updated 11 months ago
- Toolkit for structure-based deep learning on RNA.☆46Oct 20, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Clusters protein chains based on CA distance difference☆19Oct 9, 2026Updated 3 weeks ago
- ☆17Dec 10, 2024Updated last year
- TMol - Rosetta on the GPU☆117Updated this week
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- VSCode Extension for interactively visualising protein structure data in the editor☆128Updated this week
- Fast and Interpretable Protein Substructure Alignment via Optimal Transport (ICLR 2026)☆27Jun 26, 2026Updated 4 months ago
- Database of Interacting Protein Structures (DIPS)☆106Jan 26, 2024Updated 2 years ago
- Protein binding site prediction with transformers☆18Jul 7, 2026Updated 3 months ago
- It's a package for evaluation of predicted poses, right?☆79Jul 13, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆11Oct 7, 2025Updated last year
- A command-line interface for MD-Repo service☆10Oct 6, 2026Updated 3 weeks ago
- ☆13Aug 18, 2026Updated 2 months ago
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆57Jun 19, 2025Updated last year
- ☆14Aug 8, 2025Updated last year
- A high performance drop-in replacement for Biotite's PDBFile.☆43Jun 21, 2026Updated 4 months ago
- Joint Protein-Ligand Embedding☆11Oct 3, 2025Updated last year
- alphafold FAPE loss☆10Sep 28, 2021Updated 5 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆279Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A structure- and epistasis-aware model for predicting higher-order protein mutant fitness.☆19Oct 13, 2026Updated 2 weeks ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 3 years ago
- ☆12Nov 22, 2024Updated last year
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 9 months ago
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- A comprehensive resource of binding sites on human surface proteins with binder seeds☆16Feb 26, 2025Updated last year
- RetroBridge: Markov Bridge Model for Retrosynthesis Planning☆36Mar 26, 2024Updated 2 years ago
- Platonic Transformers: A Solid Choice For Equivariance (ICML 2026)☆65Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Protein Language Modeling beyond static folds reveals sequence-encoded flexibility☆37Feb 1, 2026Updated 9 months ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- Fast indexing and search of discontinuous motifs in protein structures☆221Oct 15, 2026Updated 2 weeks ago
- ☆15Sep 4, 2026Updated last month
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆25Apr 10, 2026Updated 6 months ago
- Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)☆38Feb 17, 2025Updated last year
- ☆13Mar 9, 2026Updated 7 months ago