Cython implementation of PDB -> DataFrame parsing
☆33Dec 23, 2025Updated 3 months ago
Alternatives and similar repositories for CPDB
Users that are interested in CPDB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolkit for structure-based deep learning on RNA.☆46Feb 9, 2026Updated last month
- Clusters protein chains based on CA distance difference☆16Mar 18, 2026Updated last week
- ☆16Dec 10, 2024Updated last year
- ☆18Feb 25, 2026Updated last month
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆60May 6, 2024Updated last year
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆46Nov 14, 2025Updated 4 months ago
- Terminal viewer for pdb files☆21Jan 5, 2026Updated 2 months ago
- alphafold FAPE loss☆10Sep 28, 2021Updated 4 years ago
- VSCode Extension for interactively visualising protein structure data in the editor☆120Nov 28, 2024Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆127Feb 24, 2026Updated last month
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated 3 weeks ago
- ☆12Nov 22, 2024Updated last year
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 2 months ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- It's a package for evaluation of predicted poses, right?☆74Feb 17, 2026Updated last month
- Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)☆36Feb 17, 2025Updated last year
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆151Mar 17, 2026Updated last week
- Database of Interacting Protein Structures (DIPS)☆105Jan 26, 2024Updated 2 years ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆150Apr 16, 2025Updated 11 months ago
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆54Jun 19, 2025Updated 9 months ago
- Some notes (cookbook) for pyMol. Protein Crystallography course.☆16Jun 19, 2021Updated 4 years ago
- Flow-matching for coarse graining of miniproteins.☆20Nov 18, 2022Updated 3 years ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆278Dec 10, 2024Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files☆12Apr 29, 2024Updated last year
- GeneBac: a modular framework for predicting antibiotic resistance from DNA sequence.☆16Jan 3, 2024Updated 2 years ago
- A high performance drop-in replacement for Biotite's PDBFile.☆41May 27, 2025Updated 9 months ago
- Pose checks for 3D Structure-based Drug Design methods☆94Nov 3, 2024Updated last year
- Calculating paramagnetic NMR effects in proteins☆10May 20, 2022Updated 3 years ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Aug 21, 2025Updated 7 months ago
- Pembrolizumab-like Antibody Hallucination using AlphaFold2☆15Nov 10, 2023Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆319Jul 19, 2024Updated last year
- Implementation of methods to sample from Boltzmann distributions☆21Jan 24, 2023Updated 3 years ago
- Mol* Volumes and Segmentations Extension☆12Mar 16, 2025Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆45May 22, 2025Updated 10 months ago