a-r-j / CPDBLinks
Cython implementation of PDB -> DataFrame parsing
☆23Updated last year
Alternatives and similar repositories for CPDB
Users that are interested in CPDB are comparing it to the libraries listed below
Sorting:
- Clusters protein chains based on CA distance difference☆14Updated 4 months ago
- A 3D-equivariant neural network for protein structure accuracy estimation☆18Updated 2 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated last year
- ☆17Updated 8 months ago
- A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files☆11Updated last year
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 9 months ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- ☆12Updated 6 months ago
- Generative diverse protein backbones by protein language model☆32Updated 5 months ago
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆41Updated 3 weeks ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year
- ☆14Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆17Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆37Updated 2 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated last year
- Curated list on Deep Transformers Applications on Biology and Chemistry☆18Updated 2 years ago
- ☆14Updated 3 months ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆30Updated this week
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆27Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 4 months ago
- protein structure generation with sparse all-atom denoising models☆32Updated this week
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated last year
- Code for "A Deep Learning Framework for Flexible Docking and Design"☆16Updated 2 years ago
- TMol☆36Updated 2 weeks ago
- ☆13Updated 3 years ago
- A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)☆45Updated last month
- Code for the paper "Learning to engineer protein flexibility".☆18Updated 2 months ago
- ☆31Updated 11 months ago
- Score-based 3D molecule generation with neural fields☆22Updated 6 months ago