Alternatives and similar repositories for bio2token

Users that are interested in bio2token are comparing it to the libraries listed below

• Marco-Peg / GEP
  ☆15Updated last year
• hits-mli / gafl
  Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation
  ☆17Updated 2 months ago
• pemami4911 / ppde
  Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"
  ☆12Updated 2 years ago
• JocelynSong / NAEPro
  ☆12Updated 2 years ago
• KrishnaswamyLab / ProtSCAPE
  ☆20Updated last year
• akds / CoevolveML
  Deploying synthetic coevolution and machine learning to engineer protein-protein interactions
  ☆16Updated 2 years ago
• BioinfoMachineLearning / EnQA
  A 3D-equivariant neural network for protein structure accuracy estimation
  ☆20Updated 2 years ago
• flagshippioneering / flash_ipa
  [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.
  ☆41Updated 2 months ago
• NVlabs / protcomposer
  ☆54Updated 5 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆41Updated last year
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆41Updated 6 months ago
• thejonaslab / vonmises-icml-2023
  ☆10Updated 2 years ago
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• MadryLab / rla
  Residue Level Alignment
  ☆21Updated last year
• Vincentx15 / atom2D
  ☆12Updated last year
• ai4protein / VenusVaccine
  ☆12Updated 8 months ago
• gvisani / Holographic-VAE
  ☆11Updated last year
• ai4protein / VenusX
  ☆15Updated 3 months ago
• adaptyvbio / ProtFill
  Inpainting protein sequence and structure
  ☆12Updated 2 years ago
• rdilip / kanzi
  ☆26Updated last month
• aqlaboratory / insilico_design_pipeline
  In-silico design pipeline for evaluating protein structure diffusion models.
  ☆28Updated last year
• ujk21 / dyn-informed
  ☆12Updated last year
• divnori / rnaflow
  RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
  ☆79Updated last year
• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆47Updated 2 years ago
• prescient-design / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆58Updated last year
• ykiiiiii / GraDe_IF
  Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
  ☆69Updated last year
• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆22Updated 2 years ago
• masa-ue / ProDifEvo-Refinement
  Evolutionary Algorithm with Diffusion Models for Protein Design
  ☆30Updated last week
• leojklarner / context-guided-diffusion
  Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
  ☆39Updated last year
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆52Updated 4 months ago