aertslab / create_cisTarget_databasesLinks
Create cisTarget databases
☆53Updated 3 months ago
Alternatives and similar repositories for create_cisTarget_databases
Users that are interested in create_cisTarget_databases are comparing it to the libraries listed below
Sorting:
- Functional Inference of Gene Regulation☆46Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 8 months ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 5 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- A tool for semi-automatic cell type harmonization and integration☆111Updated 6 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- R package to detect breakpoints and assign somies to scATAC-seq data☆40Updated this week
- ☆59Updated 3 months ago
- ☆62Updated 6 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- scWGCNA☆61Updated 2 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- single-cell clustering based on alternative splicing landscapes☆22Updated last year
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- Single cell RNA-seq analysis bundle☆36Updated 6 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- ☆30Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆89Updated 3 months ago
- ☆57Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆74Updated 2 weeks ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 5 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆112Updated last month
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- ☆34Updated 6 years ago
- Repository for Cibersortx☆60Updated 4 years ago