aertslab / create_cisTarget_databasesLinks
Create cisTarget databases
☆54Updated 6 months ago
Alternatives and similar repositories for create_cisTarget_databases
Users that are interested in create_cisTarget_databases are comparing it to the libraries listed below
Sorting:
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 11 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 8 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Functional Inference of Gene Regulation☆49Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆112Updated 8 months ago
- ☆64Updated 6 years ago
- ☆59Updated last year
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆90Updated 2 weeks ago
- scWGCNA☆61Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- single-cell clustering based on alternative splicing landscapes☆23Updated last year
- Repository for Cibersortx☆61Updated 4 years ago
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- ☆61Updated 2 weeks ago
- Detect doublets in single-cell RNA-seq data☆38Updated 6 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated last week
- ☆74Updated 2 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Code repository for single cell RNA-seq☆39Updated 5 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- A tool for semi-automatic cell type harmonization and integration☆117Updated last month
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 8 months ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- ☆120Updated 3 months ago