Alternatives and similar repositories for create_cisTarget_databases:

Users that are interested in create_cisTarget_databases are comparing it to the libraries listed below

• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆40Updated 8 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆31Updated 3 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆58Updated 2 years ago
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆75Updated 6 months ago
• AllonKleinLab / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆36Updated 5 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆75Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆60Updated 5 months ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆92Updated 4 years ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆66Updated last week
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆96Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated last year
• KChen-lab / METAFlux
  ☆61Updated 8 months ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆42Updated last week
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆71Updated 7 months ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆59Updated 2 months ago
• cssmillie / ulcerative_colitis
  ☆60Updated 4 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆34Updated 4 years ago
• TheHumphreysLab / plot1cell
  ☆104Updated last week
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆100Updated 6 months ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆22Updated 2 years ago
• data2intelligence / CytoSig
  ☆49Updated 5 months ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆61Updated 2 years ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆26Updated 3 months ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆72Updated 6 months ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• snehamitra / SCARlink
  ☆50Updated 6 months ago