Create cisTarget databases
☆65Jun 18, 2025Updated last year
Alternatives and similar repositories for create_cisTarget_databases
Users that are interested in create_cisTarget_databases are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆22Oct 23, 2026Updated last week
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆269Jan 16, 2026Updated 9 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆501Apr 5, 2024Updated 2 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆185Dec 8, 2022Updated 3 years ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆649Jun 26, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This is the alpha version of the CellOracle package☆508Apr 30, 2026Updated 6 months ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Aug 26, 2026Updated 2 months ago
- MultiModal Classifier Hierarchy (MMoCHi)☆13Oct 2, 2025Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆347Nov 1, 2022Updated 3 years ago
- ☆27Oct 22, 2025Updated last year
- ☆10Dec 29, 2023Updated 2 years ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- The official implementation for "SANGO".☆11Mar 17, 2024Updated 2 years ago
- ☆176Jul 3, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- CellRank: dynamics from multi-view single-cell data☆459Oct 14, 2026Updated 2 weeks ago
- R package for single-cell comparative regulatory analysis☆13Jun 26, 2021Updated 5 years ago
- AUCell: score single cells with gene regulatory networks☆207Mar 9, 2024Updated 2 years ago
- Gene-Term Enrichment Analysis (GeneTEA)☆11Jun 10, 2026Updated 4 months ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆80Jun 23, 2026Updated 4 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆81Apr 19, 2023Updated 3 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆71Apr 5, 2024Updated 2 years ago
- RcisTarget: Transcription factor binding motif enrichment☆50Mar 4, 2024Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆93Mar 20, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R package for detecting doublets in single-cell RNA sequencing data☆574Mar 21, 2025Updated last year
- ☆71Apr 22, 2026Updated 6 months ago
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 4 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆88Sep 15, 2026Updated last month
- CELLEX (CELL-type EXpression-specificity)☆45Apr 29, 2026Updated 6 months ago
- Fast motif matching in R☆50Jan 24, 2024Updated 2 years ago
- Code repository for TCAT analyses☆17Sep 26, 2025Updated last year
- Single Cell Cluster Evaluation☆102Jul 28, 2021Updated 5 years ago
- optDNTRA: optimization of De Novo Transcriptome Rna-seq Assembly☆10Aug 21, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 6 years ago
- ☆13Jan 8, 2026Updated 9 months ago
- An R package for multi-dimensional pathway enrichment analysis☆18Jan 8, 2026Updated 9 months ago
- ☆12Dec 10, 2025Updated 10 months ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated 2 years ago
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆14Apr 8, 2026Updated 6 months ago
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year