Alternatives and similar repositories for raxmlGUI

Users that are interested in raxmlGUI are comparing it to the libraries listed below

• MGI-tech-bioinformatics / SARS-CoV-2_Multi-PCR_v1.0
  SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data
  ☆20Updated 3 years ago
• Taming-the-BEAST / Introduction-to-BEAST2
  This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.
  ☆10Updated 5 months ago
• stamatak / ExaML
  Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI
  ☆50Updated 5 years ago
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 4 years ago
• BenoitMorel / ParGenes
  A massively parallel tool for model selection and tree inference on thousands of genes
  ☆51Updated last year
• davek44 / Glimmer-MG
  Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering
  ☆18Updated 10 years ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆31Updated 3 months ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆27Updated 2 years ago
• Stephane-S / Simplot_PlusPlus
  ☆39Updated 2 years ago
• balabanmetin / uDance
  ☆43Updated last year
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆39Updated 2 years ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆87Updated 3 years ago
• TheSEED / RASTtk-Distribution
  KBase distribution module for RASTtk.
  ☆13Updated 5 years ago
• transXpress / transXpress
  transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
  ☆28Updated last year
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆16Updated last year
• signalbash / borf
  ORF prediction using python
  ☆12Updated 4 years ago
• gtonkinhill / rhierbaps
  rhierbaps: R implementation of hierBAPS
  ☆36Updated 4 years ago
• LKremer / MSA_trimmer
  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
  ☆17Updated 6 years ago
• CBC-UCONN / Genome_Assembly
  ☆24Updated 8 months ago
• ghzuo / CVTree
  A whole-genome and alignment-free prokaryotic phylogeny tool
  ☆23Updated 9 months ago
• lutteropp / NetRAX
  Phylogenetic Network Inference without ILS
  ☆19Updated 3 years ago
• jessicawleigh / popart-current
  ☆22Updated 2 weeks ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆33Updated 3 years ago
• geraldinepascal / FROGS
  FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.
  ☆33Updated last month
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• sanger-pathogens / mlst_check
  Multilocus sequence typing by blast using the schemes from PubMLST
  ☆30Updated 3 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆60Updated 10 months ago
• LANL-Bioinformatics / PhaME
  Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…
  ☆33Updated 2 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆25Updated last month
• ecbush / xenoGI
  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated 2 years ago