A new graphical interface for RAxML
☆23Sep 15, 2026Updated this week
Alternatives and similar repositories for raxmlGUI
Users that are interested in raxmlGUI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆14Feb 24, 2025Updated last year
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Aug 27, 2026Updated 3 weeks ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 10 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago
- MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation☆21Dec 4, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Oct 21, 2021Updated 4 years ago
- Posterior summarisation in Bayesian phylogenetics☆75Sep 27, 2025Updated 11 months ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- Clade age estimation using a Bayesian Brownian bridge model☆15Sep 3, 2025Updated last year
- Ein: a tensor logic language unifying neural and symbolic AI☆15May 11, 2026Updated 4 months ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- ☆16Apr 11, 2026Updated 5 months ago
- This is the repository for SeCNV, a single cell copy number profiling tool.☆12Dec 12, 2024Updated last year
- KBase distribution module for RASTtk.☆15Sep 14, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A program for divvying or partially filtering multiple sequence alignments☆29Oct 14, 2019Updated 6 years ago
- ORF prediction using python☆10Aug 24, 2021Updated 5 years ago
- Bayesian neural networks using Numpy and Scipy☆12Nov 24, 2025Updated 9 months ago
- A program for estimating extinction probability and date for a given set of species, based on IUCN threat assessments☆15Jun 21, 2023Updated 3 years ago
- My fork of the official Biopython repository, used for experimental branches etc☆20Updated this week
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated last year
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆27Jan 30, 2025Updated last year
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆96Aug 11, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast implementation of the Neighbour-Joining method for phylogenetic inference☆21Sep 10, 2024Updated 2 years ago
- NeXML is an exchange standard for representing phyloinformatic data.☆15Feb 23, 2017Updated 9 years ago
- ☆16Aug 11, 2021Updated 5 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆23Oct 27, 2020Updated 5 years ago
- ☆23Dec 9, 2025Updated 9 months ago
- Clann: Investigation of phylogenomic signal using supertrees☆18Jul 25, 2026Updated last month
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 5 years ago
- forester is a collection of open-source libraries and tools for genomics and evolutionary biology research. It includes the tree viewer A…☆42Updated this week
- Train neural networks based on geographic species occurrences, environmental data and existing IUCN Red List assessments to predict the …☆28Jul 8, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆15Jul 24, 2025Updated last year
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆18Updated this week
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- Quartet-based species tree and tree of blob estimation☆16Jul 3, 2026Updated 2 months ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆17Mar 11, 2024Updated 2 years ago
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 5 years ago