paml documentation and tutorials
☆72Jan 9, 2026Updated 5 months ago
Alternatives and similar repositories for paml-tutorial
Users that are interested in paml-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆199Jan 29, 2026Updated 5 months ago
- ☆11Dec 12, 2024Updated last year
- Scripts and procedures for detecting positively selected genes and codons in primates☆22Nov 14, 2020Updated 5 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆49May 30, 2026Updated last month
- Computational Analysis of Gene Expression Evolution☆48Apr 17, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆42Jan 3, 2026Updated 5 months ago
- This is the standalone version of the EviAnn pipeline☆152Jun 24, 2026Updated last week
- ☆10Dec 20, 2022Updated 3 years ago
- ☆45Oct 29, 2022Updated 3 years ago
- ☆13May 15, 2026Updated last month
- MCMCtree tutorials☆30May 27, 2024Updated 2 years ago
- ☆17Oct 21, 2024Updated last year
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆17Jun 15, 2026Updated 2 weeks ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 3 months ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 2 months ago
- Support material for the "Comparative Genomics Laboratory" classes of the MSc in Biodiversity and Evolution at the University of Bologna.☆13Feb 27, 2026Updated 4 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 11 months ago
- Portable solution to generate genome alignment chains using lastz☆66Jun 15, 2026Updated 2 weeks ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- Analyzing combinations of codon substitution histories☆48Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆16Apr 14, 2025Updated last year
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆18Apr 16, 2026Updated 2 months ago
- ☆16Apr 9, 2021Updated 5 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆272Jun 22, 2026Updated last week
- HyPhy standalone analyses☆55Jan 5, 2026Updated 5 months ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 2 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆123Apr 7, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆32May 18, 2026Updated last month
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- ☆27Mar 30, 2026Updated 3 months ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 5 months ago
- scripts used to download and analyze insect assemblies from GenBank☆15Feb 16, 2021Updated 5 years ago
- ☆36Mar 5, 2026Updated 3 months ago