paml documentation and tutorials
☆72Jan 9, 2026Updated 9 months ago
Alternatives and similar repositories for paml-tutorial
Users that are interested in paml-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆209Jan 29, 2026Updated 9 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆50Updated this week
- genome annotation (RNAseq and TE) pipeline (draft)☆14Updated this week
- Scripts and procedures for detecting positively selected genes and codons in primates☆22Nov 14, 2020Updated 5 years ago
- ☆11Dec 12, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Computational Analysis of Gene Expression Evolution☆49Apr 17, 2026Updated 6 months ago
- A chromosome-level polyploid phasing scaffolding tool☆29Oct 19, 2026Updated last week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 5 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆36Aug 21, 2026Updated 2 months ago
- ☆61Mar 14, 2024Updated 2 years ago
- A program for assessing the T2T genome continuity and completeness☆98Oct 13, 2026Updated 2 weeks ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 9 months ago
- A Forward Simulation Framework for Studying the Role of Transposable Elements in Genome Expansion and Contraction☆11Sep 29, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- This is the standalone version of the EviAnn pipeline☆187Oct 7, 2026Updated 3 weeks ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆43Oct 22, 2026Updated last week
- ☆15Oct 24, 2024Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆74Updated this week
- ☆11Jun 2, 2025Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆104Updated this week
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆26Nov 21, 2023Updated 2 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19Aug 30, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Robust identification of orthologous Synteny with the Orthology Index☆43Aug 22, 2026Updated 2 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆58Dec 10, 2025Updated 10 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆288Aug 10, 2026Updated 2 months ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 7 months ago
- SplitsTree4 phylogenetic network tool☆12Sep 21, 2023Updated 3 years ago
- Phylogenomic species tree inference under gene duplication and loss☆13Sep 20, 2026Updated last month
- A command line tool for quickly visualizing phylogenetic tree via a single command in terminal.☆10Apr 9, 2019Updated 7 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- MCMCtree tutorials☆30May 27, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- HELIANO is a software for detection and classification of Helitron-like elements.☆35Jul 13, 2026Updated 3 months ago
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆18Sep 23, 2026Updated last month
- ☆21Jul 12, 2026Updated 3 months ago
- ☆13Oct 19, 2026Updated last week
- pipeline for pseudogene prediction and analysis☆11Jan 26, 2023Updated 3 years ago
- ☆45Oct 29, 2022Updated 4 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago