☆13Dec 4, 2025Updated 3 months ago
Alternatives and similar repositories for paPAML
Users that are interested in paPAML are comparing it to the libraries listed below
Sorting:
- HyPhy standalone analyses☆53Jan 5, 2026Updated 2 months ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 3 months ago
- PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding☆11Mar 31, 2021Updated 4 years ago
- Parse scientific names using gnparser (https://github.com/gnames/gnparser)☆15Jan 1, 2026Updated 2 months ago
- Tutorial for using MCMCTree as implemented by Brown Lab at SIUC. For divergence time estimation on UCE datasets, for dendrobatid frogs.☆10Jun 19, 2020Updated 5 years ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jul 28, 2025Updated 7 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 2 weeks ago
- distance based phylogenetic placement☆27Feb 28, 2024Updated 2 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated 2 months ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated 10 months ago
- Generate Galaxy tool descriptions automatically from QIIME 2 actions.☆20Jan 27, 2026Updated last month
- small scripts, functions or bits of code for parsing genomic data☆14Sep 24, 2022Updated 3 years ago
- Plasmid analysis using rearrangement distances☆50Mar 12, 2026Updated last week
- QGIS svg icons - Animal silhouettes☆12Nov 17, 2018Updated 7 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- Pipelines for Drosophila genome assembly and analysis☆16May 15, 2022Updated 3 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- This is a phylogeny workflow for batch submission to HPC cluster built with Slurm queue manager☆10Mar 19, 2024Updated 2 years ago
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆23Feb 13, 2026Updated last month
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- Drawing 'dendrogram' using 'ggtree'☆13Nov 1, 2025Updated 4 months ago
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- Ready-made Taxonomic Weights Repository☆26Mar 31, 2022Updated 3 years ago
- EasyCodeML: A visual tool for analysis of selection using CodeML☆83May 7, 2023Updated 2 years ago
- In this repo, I explain how can we use clusterProfiler and Tidyverse to perform (GO or KEGG) enrichment analysis in R.☆27Sep 20, 2023Updated 2 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions☆12Dec 18, 2025Updated 3 months ago
- Create custom arrowheads for ggplot2 via ggarrow