Cell2location paper - Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics
☆15Nov 26, 2022Updated 3 years ago
Alternatives and similar repositories for cell2location_paper
Users that are interested in cell2location_paper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codes for generating stlearn figures☆10May 22, 2023Updated 3 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆465Oct 19, 2026Updated last week
- ☆12Mar 22, 2023Updated 3 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 7 years ago
- ☆13Jan 29, 2021Updated 5 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- Single-cell Graph Cuts Optimization☆17Apr 27, 2024Updated 2 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆19Feb 6, 2026Updated 8 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆52Aug 18, 2025Updated last year
- A python package for calculating local cell specific networks☆18Nov 17, 2023Updated 2 years ago
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 9 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆54Dec 1, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python drop-in replacement for PyHPO using Rust☆13Dec 9, 2025Updated 10 months ago
- ☆21Dec 15, 2023Updated 2 years ago
- Reproducing the experiments of the DestVI paper☆25Feb 9, 2022Updated 4 years ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆38Feb 10, 2025Updated last year
- Code and data sharing of Liu et al. 2023 manuscript☆19Apr 18, 2023Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆23Sep 12, 2023Updated 3 years ago
- GRiNCH: Graph-Regularized NMF and Clustering for Hi-C☆10Mar 15, 2024Updated 2 years ago
- ☆11Jan 13, 2020Updated 6 years ago
- MLCM creates a 2D Multi-Label Confusion Matrix☆10Feb 1, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- BaCaDI: Bayesian Causal Discovery with Unknown Interventions☆15Feb 23, 2023Updated 3 years ago
- beellama.cpp fork with CMP 90HX (GA102, sm_86) optimizations: DP4A→IMAD, FP32→HFMA2 — +58-87% decode speed☆13Sep 3, 2026Updated last month
- A deep learning toolkit for LINCS L1000 expression data☆10Aug 25, 2021Updated 5 years ago
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- ☆12Sep 10, 2026Updated last month
- Rhetorical sentence classification using LLMs☆11Oct 26, 2025Updated last year
- An example of continuous integration and deployment of a sphinx project☆13Aug 25, 2023Updated 3 years ago
- Interactive spatial transcriptomics viewer for h5ad files☆16Mar 14, 2026Updated 7 months ago
- Cell-specific Network Constructed by Single-cell RNA Sequencing Data☆23Dec 15, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- These are tools for post GWAS analysis. Please see below link as a document for install and use.☆11Mar 15, 2023Updated 3 years ago
- Bead-based single-cell atac processing☆33Jul 6, 2026Updated 3 months ago
- CSC 541 Assignment 4 B-Trees Introduction The goals of this assignment are two-fold: To introduce you to searching data on disk using B…☆11May 10, 2015Updated 11 years ago
- ☆11May 16, 2020Updated 6 years ago
- An interpretable deep learning model for cancer classification using high-dimensional omics data☆18Jan 24, 2022Updated 4 years ago
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- ☆31Apr 26, 2024Updated 2 years ago