Alternatives and similar repositories for cell2location_paper

Users that are interested in cell2location_paper are comparing it to the libraries listed below

• DongqingSun96 / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆17Updated 3 years ago
• liuqivandy / SpaGene
  ☆24Updated 2 years ago
• haoshijie13 / LISTA
  Codes used in LISTA project.
  ☆13Updated last year
• kaizhang / single-cell-benchmark
  ☆10Updated 2 years ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last week
• chriscainx / gastric-cancer
  ☆15Updated 2 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• BGI-DEV-REG / ARTISTA
  Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas
  ☆21Updated 3 years ago
• ML4BM-Lab / ELATUS
  ☆13Updated 5 months ago
• mardzix / bcd_nano_CUTnTag
  ☆12Updated last year
• bioinfo-biols / Flow2Spatial
  Flow2Spatial reconstructs spatial proteomics through transfer learning.
  ☆22Updated 4 months ago
• WanluLiuLab / scAtlasVAE
  ☆38Updated 3 months ago
• ejarmand / comparative_epigenomic_motor_cortex
  ☆10Updated 9 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• Roy-lab / scMTNI
  ☆30Updated last month
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 8 months ago
• RubD / Giotto
  Spatial omics analysis toolbox
  ☆15Updated last year
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆21Updated last year
• STOmics / StereoMMv1
  StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…
  ☆37Updated 4 months ago
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆22Updated last year
• OSU-BMBL / scGNN2.0
  ☆12Updated last year
• Coolgenome / PDAC
  ☆21Updated 7 months ago
• di-0579 / Spatial_epigenome-transcriptome_co-sequencing
  ☆31Updated 2 years ago
• cliffzhou92 / STT
  ☆19Updated last year
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• aristoteleo / spateo-tutorials
  tutorials for spateo package
  ☆20Updated 9 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆27Updated 4 years ago
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated 10 months ago
• cquzys / SANGO
  The official implementation for "SANGO".
  ☆11Updated last year
• DHUDBlab / IGEGRNS
  ☆11Updated last year